; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg28284 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28284
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHistone H2A
Genome locationCarg_Chr10:8604296..8604799
RNA-Seq ExpressionCarg28284
SyntenyCarg28284
Gene Ontology termsGO:0031507 - heterochromatin assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR002119 - Histone H2A
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold
IPR032454 - Histone H2A, C-terminal domain
IPR032458 - Histone H2A conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653389.1 hypothetical protein Csa_007458 [Cucumis sativus]9.7e-6598.51Show/hide
Query:  STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV
        STKGGRGKP+ATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV
Subjt:  STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV

Query:  TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
Subjt:  TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

XP_022933937.1 probable histone H2AXb [Cucurbita moschata]1.1e-6598.53Show/hide
Query:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
        MSSTKGGRGKP+ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
Subjt:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG

Query:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
         VTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
Subjt:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

XP_022961601.1 probable histone H2AXb [Cucurbita moschata]1.0e-66100Show/hide
Query:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
        MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
Subjt:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG

Query:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
Subjt:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

XP_022968814.1 probable histone H2AXb [Cucurbita maxima]1.1e-6599.26Show/hide
Query:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
        MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
Subjt:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG

Query:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        SVTIANGGVLPNIHQTLLPKKVGKDK DIGSASQEF
Subjt:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

XP_038878621.1 histone H2AX [Benincasa hispida]3.3e-6598.52Show/hide
Query:  SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGS
        SSTKGGRGKP+ATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGS
Subjt:  SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGS

Query:  VTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        VTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
Subjt:  VTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

TrEMBL top hitse value%identityAlignment
A0A5D3CFR7 Histone H2A4.7e-6598.51Show/hide
Query:  STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV
        STKGGRGKP+ATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV
Subjt:  STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV

Query:  TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
Subjt:  TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

A0A6J1F184 Histone H2A5.5e-6698.53Show/hide
Query:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
        MSSTKGGRGKP+ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
Subjt:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG

Query:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
         VTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
Subjt:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

A0A6J1HAT5 Histone H2A5.0e-67100Show/hide
Query:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
        MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
Subjt:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG

Query:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
Subjt:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

A0A6J1I0R4 Histone H2A5.5e-6699.26Show/hide
Query:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
        MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
Subjt:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG

Query:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        SVTIANGGVLPNIHQTLLPKKVGKDK DIGSASQEF
Subjt:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

A0A6J1I3J2 Histone H2A5.5e-6698.53Show/hide
Query:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
        MSSTKGGRGKP+ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG
Subjt:  MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG

Query:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
         VTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
Subjt:  SVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

SwissProt top hitse value%identityAlignment
A2ZL69 Probable histone H2AXb7.5e-6090.84Show/hide
Query:  GGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA
        GGRGK + +KSV+RS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA
Subjt:  GGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA

Query:  NGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
         GGVLPNIHQTLLPKK GKDK DIGSASQEF
Subjt:  NGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

O04848 Probable histone H2AXa5.0e-6494.03Show/hide
Query:  STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV
        +TKGGRGKP+ATKSV+RS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSV
Subjt:  STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV

Query:  TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        TIANGGVLPNIHQTLLP KVGK+KGDIGSASQEF
Subjt:  TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

O65759 Histone H2AX5.0e-6493.33Show/hide
Query:  SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGS
        ++TKGGRGKP+A+KSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGS
Subjt:  SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGS

Query:  VTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        VTIANGGVLPNIHQTLLPKKVGK KG+IGSASQEF
Subjt:  VTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

P35063 Histone H2AX2.1e-6291.11Show/hide
Query:  SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGS
        S  KGGRGK ++TKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+
Subjt:  SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGS

Query:  VTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        VTIANGGVLPNIHQ LLPKK GKDKG+IGSASQEF
Subjt:  VTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

Q9S9K7 Probable histone H2AXb2.2e-6494.78Show/hide
Query:  STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV
        +TKGGRGKP+ATKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSV
Subjt:  STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV

Query:  TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        TIANGGVLPNIHQTLLP KVGK+KGDIGSASQEF
Subjt:  TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

Arabidopsis top hitse value%identityAlignment
AT1G08880.1 Histone superfamily protein3.6e-6594.03Show/hide
Query:  STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV
        +TKGGRGKP+ATKSV+RS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSV
Subjt:  STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV

Query:  TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        TIANGGVLPNIHQTLLP KVGK+KGDIGSASQEF
Subjt:  TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

AT1G51060.1 histone H2A 101.4e-5083.87Show/hide
Query:  GRGKP----QATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV
        GRGK      A K+ TRS KAGLQFPVGRIARFLK GKYAERVGAGAPVYL+AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG V
Subjt:  GRGKP----QATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV

Query:  TIANGGVLPNIHQTLLPKKVGKDK
        TIANGGV+PNIH  LLPKK G  K
Subjt:  TIANGGVLPNIHQTLLPKKVGKDK

AT1G54690.1 gamma histone variant H2AX1.6e-6594.78Show/hide
Query:  STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV
        +TKGGRGKP+ATKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSV
Subjt:  STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV

Query:  TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF
        TIANGGVLPNIHQTLLP KVGK+KGDIGSASQEF
Subjt:  TIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

AT4G27230.1 histone H2A 25.0e-5184.68Show/hide
Query:  GRGKP----QATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV
        GRGK      A KS +RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG V
Subjt:  GRGKP----QATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV

Query:  TIANGGVLPNIHQTLLPKKVGKDK
        TIANGGV+PNIH  LLPKK G  K
Subjt:  TIANGGVLPNIHQTLLPKKVGKDK

AT4G27230.2 histone H2A 25.0e-5184.68Show/hide
Query:  GRGKP----QATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV
        GRGK      A KS +RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG V
Subjt:  GRGKP----QATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSV

Query:  TIANGGVLPNIHQTLLPKKVGKDK
        TIANGGV+PNIH  LLPKK G  K
Subjt:  TIANGGVLPNIHQTLLPKKVGKDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCCACCAAGGGCGGTAGAGGAAAGCCGCAAGCCACCAAATCCGTTACACGATCGCATAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCAAGGTTTCTCAA
GGCCGGAAAGTACGCCGAGCGTGTCGGCGCTGGCGCTCCAGTATATTTGTCGGCCGTTCTCGAGTATCTTGCCGCCGAGGTTTTGGAGCTTGCTGGAAATGCTGCTAGAG
ACAACAAGAAGAATCGTATTGTGCCGAGGCACATCCAACTTGCTGTGAGGAACGATGAGGAGTTGAGTAAGCTTTTAGGATCTGTAACCATTGCTAATGGAGGTGTTTTG
CCCAATATTCACCAAACTCTTTTGCCTAAAAAGGTCGGCAAAGATAAGGGTGATATCGGTTCTGCATCACAGGAATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCCACCAAGGGCGGTAGAGGAAAGCCGCAAGCCACCAAATCCGTTACACGATCGCATAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCAAGGTTTCTCAA
GGCCGGAAAGTACGCCGAGCGTGTCGGCGCTGGCGCTCCAGTATATTTGTCGGCCGTTCTCGAGTATCTTGCCGCCGAGGTTTTGGAGCTTGCTGGAAATGCTGCTAGAG
ACAACAAGAAGAATCGTATTGTGCCGAGGCACATCCAACTTGCTGTGAGGAACGATGAGGAGTTGAGTAAGCTTTTAGGATCTGTAACCATTGCTAATGGAGGTGTTTTG
CCCAATATTCACCAAACTCTTTTGCCTAAAAAGGTCGGCAAAGATAAGGGTGATATCGGTTCTGCATCACAGGAATTTTAG
Protein sequenceShow/hide protein sequence
MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVL
PNIHQTLLPKKVGKDKGDIGSASQEF