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Carg28286 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28286
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionATP synthase subunit c, chloroplastic
Genome locationCarg_Chr13:2888002..2888510
RNA-Seq ExpressionCarg28286
SyntenyCarg28286
Gene Ontology termsGO:0050821 - protein stabilization (biological process)
GO:0006351 - transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0015986 - ATP synthesis coupled proton transport (biological process)
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component)
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component)
GO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0008289 - lipid binding (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0042301 - phosphate ion binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR038662 - F1F0 ATP synthase subunit C superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD5336135.1 unnamed protein product [Arabidopsis thaliana]6.4e-0574.42Show/hide
Query:  VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        VL F+  ELI++PL+S AS+IAAGL  GLASIGPGVGQGTAAG
Subjt:  VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
KAF7117216.1 hypothetical protein RHSIM_RhsimPtG0004600 [Rhododendron simsii]1.1e-0472.09Show/hide
Query:  VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        VL F+  EL+++PLIS AS+IAAGL  GLASIGPG+GQGTAAG
Subjt:  VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
KAG5512805.1 hypothetical protein RHGRI_038766 [Rhododendron griersonianum]1.1e-0472.09Show/hide
Query:  VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        VL F+  EL+++PLIS AS+IAAGL  GLASIGPG+GQGTAAG
Subjt:  VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
KAG5513134.1 hypothetical protein RHGRI_038254 [Rhododendron griersonianum]1.1e-0472.09Show/hide
Query:  VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        VL F+  EL+++PLIS AS+IAAGL  GLASIGPG+GQGTAAG
Subjt:  VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
KAG7019310.1 ATP synthase subunit c, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-12100Show/hide
Query:  MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
Subjt:  MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
TrEMBL top hitse value%identityAlignment
A0A1W5PPK4 ATP synthase subunit c, chloroplastic6.9e-0580Show/hide
Query:  FLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        FL  ELI++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Subjt:  FLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
A0A2G3DGZ7 ATP synthase subunit b, chloroplastic1.2e-0477.5Show/hide
Query:  FLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        F+  ELI++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Subjt:  FLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
A0A5C7GPA8 Multifunctional fusion protein6.9e-0568.89Show/hide
Query:  MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        + ++P +  ELI++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Subjt:  MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
A0A5C7IE38 DNA-directed RNA polymerase subunit6.9e-0568.89Show/hide
Query:  MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        + ++P +  ELI++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Subjt:  MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
A0A7G2FND8 30S ribosomal protein S2, chloroplastic3.1e-0574.42Show/hide
Query:  VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        VL F+  ELI++PL+S AS+IAAGL  GLASIGPGVGQGTAAG
Subjt:  VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
SwissProt top hitse value%identityAlignment
A4QJA2 ATP synthase subunit c, chloroplastic5.1e-0581.82Show/hide
Query:  IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        ++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Subjt:  IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
A4QJI6 ATP synthase subunit c, chloroplastic5.1e-0581.82Show/hide
Query:  IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        ++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Subjt:  IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
Q3V547 ATP synthase subunit c, chloroplastic5.1e-0581.82Show/hide
Query:  IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        ++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Subjt:  IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
Q4FGF2 ATP synthase subunit c, chloroplastic5.1e-0581.82Show/hide
Query:  IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        ++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Subjt:  IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
Q85FN2 ATP synthase subunit c, chloroplastic5.1e-0581.82Show/hide
Query:  IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        ++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Subjt:  IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
Arabidopsis top hitse value%identityAlignment
ATCG00140.1 ATP synthase subunit C family protein4.7e-0678.79Show/hide
Query:  IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
        ++PL+S AS+IAAGL  GLASIGPGVGQGTAAG
Subjt:  IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTCCTTCCGTTTCTTTCGTCTGAACTTATTATTCATCCACTGATTTCTCCCGCTTCCCTTATTGCTGCTGGATTGGGCGGCGGGCTTGCTTCTATTGGACCTGG
GGTTGGTCAAGGTACTGCTGCGGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTCCTTCCGTTTCTTTCGTCTGAACTTATTATTCATCCACTGATTTCTCCCGCTTCCCTTATTGCTGCTGGATTGGGCGGCGGGCTTGCTTCTATTGGACCTGG
GGTTGGTCAAGGTACTGCTGCGGGCTAA
Protein sequenceShow/hide protein sequence
MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG