; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg28298 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28298
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsigma factor binding protein 2, chloroplastic-like
Genome locationCarg_Chr03:2124894..2125406
RNA-Seq ExpressionCarg28298
SyntenyCarg28298
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603312.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.7e-4667.44Show/hide
Query:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA
        MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA G     +        G+          P  P    D AAA
Subjt:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA

Query:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
        FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPAL+PAAAATAVLYESYAR
Subjt:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR

KAG7033592.1 hypothetical protein SDJN02_03316, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-92100Show/hide
Query:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHIHPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFP
        MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHIHPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFP
Subjt:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHIHPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFP

Query:  DIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
        DIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Subjt:  DIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR

XP_022932879.1 sigma factor binding protein 2, chloroplastic-like [Cucurbita moschata]3.3e-4669.19Show/hide
Query:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA
        MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA G    L  + T       D S       T P      AAA
Subjt:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA

Query:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
        FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Subjt:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR

XP_022967902.1 sigma factor binding protein 2, chloroplastic-like isoform X1 [Cucurbita maxima]5.9e-4364.53Show/hide
Query:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA
        MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA G       +  T +      SS+              AAA
Subjt:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA

Query:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
        FPDIH+TTADANLM NNNPSLTVE PMEDDP LG+FYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Subjt:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR

XP_022967903.1 sigma factor binding protein 2, chloroplastic-like isoform X2 [Cucurbita maxima]5.9e-4364.53Show/hide
Query:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA
        MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA G       +  T +      SS+              AAA
Subjt:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA

Query:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
        FPDIH+TTADANLM NNNPSLTVE PMEDDP LG+FYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Subjt:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR

TrEMBL top hitse value%identityAlignment
A0A0A0L3J8 VQ domain-containing protein3.2e-1843.43Show/hide
Query:  AGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIH
        AGT TG+ HR LD V+RRKPTKK      Q K +    +++V+I +PMK  TSA G     +        G+          P  P    D AA+   ++
Subjt:  AGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIH

Query:  NTTADAN--------LMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
        NT +           ++N+NN SL  E+P EDD  LGSFYDD DDLIFP PVIGN+  LLPA  A AV+YES AR
Subjt:  NTTADAN--------LMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR

A0A6J1EY87 sigma factor binding protein 2, chloroplastic-like1.6e-4669.19Show/hide
Query:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA
        MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA G    L  + T       D S       T P      AAA
Subjt:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA

Query:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
        FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Subjt:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR

A0A6J1F0S9 sigma factor binding protein 1, chloroplastic-like7.8e-1742.86Show/hide
Query:  GSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPD
        G  G G  N H  L GV RRKPTKK     T+        +++V+I +PMK  TSA        F          D        P++     + A A PD
Subjt:  GSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPD

Query:  -IHNTTA-----DANLMNNNNP-SLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYA
         +H+TTA     D+ +MNNN P +L VE+P E D  +GSFYDD DDLI PPP+IGN+   LPAA A AV+YESYA
Subjt:  -IHNTTA-----DANLMNNNNP-SLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYA

A0A6J1HS32 sigma factor binding protein 2, chloroplastic-like isoform X12.8e-4364.53Show/hide
Query:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA
        MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA G       +  T +      SS+              AAA
Subjt:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA

Query:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
        FPDIH+TTADANLM NNNPSLTVE PMEDDP LG+FYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Subjt:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR

A0A6J1HWH9 sigma factor binding protein 2, chloroplastic-like isoform X22.8e-4364.53Show/hide
Query:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA
        MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA G       +  T +      SS+              AAA
Subjt:  MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAA

Query:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
        FPDIH+TTADANLM NNNPSLTVE PMEDDP LG+FYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Subjt:  FPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGCAGCGCCGGCACCGGCACCGGAAACAGCCACAGACTCCTCGACGGCGTCCACCGGCGAAAGCCCACAAAGAAAAACCACATACAACGAACCCAACACAAACA
ACAAAACCCATCAAATCTGAGAATGGTACATATCCACCCCATGAAGCGTTCAACATCAGCGCATGGAGTTCATAATTGGCTTTGGTTTCGCACAACAACTCACCGCCAAG
GACGCACGGACACTTCTTCCAGGACCCTCTACCTTCCCACCCGGCCGCTCCTCTACGGCGACACGGCCGCCGCCTTCCCCGACATCCACAACACCACGGCGGATGCTAAT
CTGATGAACAATAACAACCCTTCACTTACTGTTGAGATTCCGATGGAGGATGACCCCTTTCTTGGCTCTTTCTATGATGACATTGACGATCTGATTTTCCCCCCTCCGGT
GATCGGAAACTACCCTGCGCTGCTTCCGGCGGCGGCGGCAACGGCGGTTTTGTATGAATCTTATGCAAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGGCAGCGCCGGCACCGGCACCGGAAACAGCCACAGACTCCTCGACGGCGTCCACCGGCGAAAGCCCACAAAGAAAAACCACATACAACGAACCCAACACAAACA
ACAAAACCCATCAAATCTGAGAATGGTACATATCCACCCCATGAAGCGTTCAACATCAGCGCATGGAGTTCATAATTGGCTTTGGTTTCGCACAACAACTCACCGCCAAG
GACGCACGGACACTTCTTCCAGGACCCTCTACCTTCCCACCCGGCCGCTCCTCTACGGCGACACGGCCGCCGCCTTCCCCGACATCCACAACACCACGGCGGATGCTAAT
CTGATGAACAATAACAACCCTTCACTTACTGTTGAGATTCCGATGGAGGATGACCCCTTTCTTGGCTCTTTCTATGATGACATTGACGATCTGATTTTCCCCCCTCCGGT
GATCGGAAACTACCCTGCGCTGCTTCCGGCGGCGGCGGCAACGGCGGTTTTGTATGAATCTTATGCAAGGTGA
Protein sequenceShow/hide protein sequence
MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHIHPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADAN
LMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR