; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G004330 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G004330
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
Genome locationCicolChr01:4433382..4435714
RNA-Seq ExpressionCcUC01G004330
SyntenyCcUC01G004330
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7810101.1 hypothetical protein G2W53_036844 [Senna tora]4.4e-1936.43Show/hide
Query:  TSQIPSLRNEPVQEHALSHALQPIPNPQLLSISPARNPPPSAPPHLSAAFRFPVKTRAPKRLTLRRTPLHRRDRRGRIRFGY--LTIRNRRIRSTESLRT
        TSQ PS ++EP Q    S A   IPN +       RN  P++ P  S   R P +TRAP+   LRRT L RR  RGRIR        R+    S  S   
Subjt:  TSQIPSLRNEPVQEHALSHALQPIPNPQLLSISPARNPPPSAPPHLSAAFRFPVKTRAPKRLTLRRTPLHRRDRRGRIRFGY--LTIRNRRIRSTESLRT

Query:  TARTIVERPCGFLMKLGIRLCNLVRERTLELRNESISVTHSASRRHDAGDCFGIEFS----------KNQRRYELIVEEIGEVVMRRN---RKVTESIQI
        TART    P GF  + G R C   R+R   +      V  +ASRRHD     G+E S          ++    EL+VE+IGE+   R    R++ E++++
Subjt:  TARTIVERPCGFLMKLGIRLCNLVRERTLELRNESISVTHSASRRHDAGDCFGIEFS----------KNQRRYELIVEEIGEVVMRRN---RKVTESIQI

Query:  LLQFRHAVHFAAFASVEEPSEVSP---CVVVVIGVESGEI------RQSSGGKNRGEVKNRGEKVEE--GVITEKRKHGD
        LL+  HA H AA   VEE  EV P    VVVV+    G           SGGK     +   E+ EE  G+ITEK+ H +
Subjt:  LLQFRHAVHFAAFASVEEPSEVSP---CVVVVIGVESGEI------RQSSGGKNRGEVKNRGEKVEE--GVITEKRKHGD
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGGTCCACTTTCTTCCCTCGCGGACTCAAACTTGGATACATCACAGATTCCTTCACTGCGGAATGAGCCAGTCCAAGAACATGCCCTATCTCATGCGTTA
CAACCGATTCCAAATCCACAGCTACTTTCGATTTCTCCTGCTCGAAATCCACCGCCCAGCGCTCCGCCGCATCTAAGTGCAGCCTTCCGTTTTCCGGTGAAAACG
CGTGCGCCAAAACGCCTAACACTCCGTCGAACGCCTCTCCATCGCCGTGATCGCCGCGGTAGAATCCGATTCGGATATCTGACGATTCGTAATCGGAGGATTCGT
TCAACGGAATCACTGCGGACCACCGCGAGAACGATCGTCGAACGACCTTGCGGATTTCTGATGAAGTTAGGTATTCGATTGTGTAATCTGGTGAGAGAGCGTACG
TTAGAGTTGAGGAACGAATCCATCTCGGTCACTCATTCCGCATCTAGGCGACATGATGCTGGCGATTGTTTCGGAATCGAGTTTTCCAAGAATCAACGCCGATAC
GAATTGATCGTCGAAGAAATCGGAGAAGTTGTTATGAGGAGGAATCGGAAGGTAACCGAATCGATTCAAATACTTCTTCAGTTCCGACATGCCGTTCACTTCGCT
GCCTTTGCCAGCGTCGAGGAACCGAGCGAAGTTTCTCCATGCGTAGTTGTTGTTATCGGCGTCGAGAGTGGTGAAATCCGGCAAAGTTCTGGCGGGAAAAACAGG
GGAGAAGTGAAAAACAGAGGAGAGAAGGTAGAAGAAGGGGTAATAACGGAAAAACGGAAACATGGTGATATTATTTGGCAGTTATCGGGACATGAGAAATCCAAA
GGGGAAATAAAAAGAATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGGTCCACTTTCTTCCCTCGCGGACTCAAACTTGGATACATCACAGATTCCTTCACTGCGGAATGAGCCAGTCCAAGAACATGCCCTATCTCATGCGTTA
CAACCGATTCCAAATCCACAGCTACTTTCGATTTCTCCTGCTCGAAATCCACCGCCCAGCGCTCCGCCGCATCTAAGTGCAGCCTTCCGTTTTCCGGTGAAAACG
CGTGCGCCAAAACGCCTAACACTCCGTCGAACGCCTCTCCATCGCCGTGATCGCCGCGGTAGAATCCGATTCGGATATCTGACGATTCGTAATCGGAGGATTCGT
TCAACGGAATCACTGCGGACCACCGCGAGAACGATCGTCGAACGACCTTGCGGATTTCTGATGAAGTTAGGTATTCGATTGTGTAATCTGGTGAGAGAGCGTACG
TTAGAGTTGAGGAACGAATCCATCTCGGTCACTCATTCCGCATCTAGGCGACATGATGCTGGCGATTGTTTCGGAATCGAGTTTTCCAAGAATCAACGCCGATAC
GAATTGATCGTCGAAGAAATCGGAGAAGTTGTTATGAGGAGGAATCGGAAGGTAACCGAATCGATTCAAATACTTCTTCAGTTCCGACATGCCGTTCACTTCGCT
GCCTTTGCCAGCGTCGAGGAACCGAGCGAAGTTTCTCCATGCGTAGTTGTTGTTATCGGCGTCGAGAGTGGTGAAATCCGGCAAAGTTCTGGCGGGAAAAACAGG
GGAGAAGTGAAAAACAGAGGAGAGAAGGTAGAAGAAGGGGTAATAACGGAAAAACGGAAACATGGTGATATTATTTGGCAGTTATCGGGACATGAGAAATCCAAA
GGGGAAATAAAAAGAATATGA
Protein sequenceShow/hide protein sequence
MCGPLSSLADSNLDTSQIPSLRNEPVQEHALSHALQPIPNPQLLSISPARNPPPSAPPHLSAAFRFPVKTRAPKRLTLRRTPLHRRDRRGRIRFGYLTIRNRRIR
STESLRTTARTIVERPCGFLMKLGIRLCNLVRERTLELRNESISVTHSASRRHDAGDCFGIEFSKNQRRYELIVEEIGEVVMRRNRKVTESIQILLQFRHAVHFA
AFASVEEPSEVSPCVVVVIGVESGEIRQSSGGKNRGEVKNRGEKVEEGVITEKRKHGDIIWQLSGHEKSKGEIKRI