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CcUC01G004540 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G004540
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionPaired amphipathic helix protein Sin3-like 4
Genome locationCicolChr01:4591870..4592145
RNA-Seq ExpressionCcUC01G004540
SyntenyCcUC01G004540
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR003822 - Paired amphipathic helix
IPR036600 - Paired amphipathic helix superfamily
IPR039774 - Transcriptional regulatory protein Sin3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151191.1 paired amphipathic helix protein Sin3-like 4 isoform X1 [Momordica charantia]1.3e-1754.17Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A++ D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

XP_022151192.1 paired amphipathic helix protein Sin3-like 4 isoform X2 [Momordica charantia]1.3e-1754.17Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A++ D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

XP_022151193.1 paired amphipathic helix protein Sin3-like 4 isoform X3 [Momordica charantia]1.3e-1754.17Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A++ D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

XP_022943142.1 paired amphipathic helix protein Sin3-like 4 isoform X2 [Cucurbita moschata]3.9e-1753.12Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ +  ++ D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

XP_022943143.1 paired amphipathic helix protein Sin3-like 4 isoform X3 [Cucurbita moschata]3.9e-1753.12Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ +  ++ D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

TrEMBL top hitse value%identityAlignment
A0A6J1DBI6 paired amphipathic helix protein Sin3-like 4 isoform X36.4e-1854.17Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A++ D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

A0A6J1DCT7 paired amphipathic helix protein Sin3-like 4 isoform X26.4e-1854.17Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A++ D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

A0A6J1DDV1 paired amphipathic helix protein Sin3-like 4 isoform X16.4e-1854.17Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A++ D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

A0A6J1FQW7 paired amphipathic helix protein Sin3-like 4 isoform X11.9e-1753.12Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ +  ++ D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

A0A6J1JXD3 paired amphipathic helix protein Sin3-like 4 isoform X11.9e-1753.12Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK
        MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ +  ++ D+F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK

SwissProt top hitse value%identityAlignment
O04539 Paired amphipathic helix protein Sin3-like 44.1e-1442.11Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP------AKPLEDDQHPPPQ
        M    S++KLT  +AL+Y+  V+++FQ+ R+K++ FL V++DFKAQRVDT+ +  ++ ++F+ + +LI+GF TFLP       +P EDDQ   P+
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP------AKPLEDDQHPPPQ

O48686 Paired amphipathic helix protein Sin3-like 32.4e-1440.43Show/hide
Query:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLPAK---PLEDDQHPPPQNK
        M   GS++KLT  +AL+Y+  V+++FQ+ R K++ FL V+++FK+QRVDT+ +  ++ ++F+ H +LI+GF TFLP      L+ +   PP  K
Subjt:  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLPAK---PLEDDQHPPPQNK

Q9LFQ3 Paired amphipathic helix protein Sin3-like 29.2e-1446.48Show/hide
Query:  SSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP
        +++KLT  +AL+Y+  V+E FQ+ R+K++ FL V++DFKAQ+ DTS + +++ ++F+ H +LI GF TFLP
Subjt:  SSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP

Q9SRH9 Paired amphipathic helix protein Sin3-like 14.9e-1552.05Show/hide
Query:  RGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP
        R  S+KLT  +ALSY+  V+E FQ+ REK++ FL V++DFKAQR DT  + A++ ++F+ H +LI GF TFLP
Subjt:  RGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP

Q9XIE1 Paired amphipathic helix protein Sin3-like 53.7e-1550Show/hide
Query:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP
        G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A++ D+F+ + DL++GF TFLP
Subjt:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP

Arabidopsis top hitse value%identityAlignment
AT1G59890.1 SIN3-like 52.7e-1650Show/hide
Query:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP
        G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A++ D+F+ + DL++GF TFLP
Subjt:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP

AT1G59890.2 SIN3-like 52.7e-1650Show/hide
Query:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP
        G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A++ D+F+ + DL++GF TFLP
Subjt:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP

AT1G59890.3 SIN3-like 52.7e-1650Show/hide
Query:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP
        G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A++ D+F+ + DL++GF TFLP
Subjt:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP

AT1G59890.4 SIN3-like 52.7e-1650Show/hide
Query:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP
        G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A++ D+F+ + DL++GF TFLP
Subjt:  GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP

AT3G01320.1 SIN3-like 13.5e-1652.05Show/hide
Query:  RGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP
        R  S+KLT  +ALSY+  V+E FQ+ REK++ FL V++DFKAQR DT  + A++ ++F+ H +LI GF TFLP
Subjt:  RGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAACGAGGAAGTTCCGAGAAGTTAACCATTACGGAAGCCCTATCATATATCATGAGAGTGAGGGAAAGATTTCAAGAAAACCGGGAAAAGTTTGAAGCT
TTCCTTCGAGTAATCCAAGATTTCAAGGCCCAAAGAGTTGATACTTCGGAACTCTTTGCAAAAATAATGGACATGTTTCAAGACCACCCAGATCTTATTATGGGC
TTCGCTACTTTCTTGCCCGCAAAACCCCTGGAGGATGATCAACATCCACCTCCACAAAACAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAACGAGGAAGTTCCGAGAAGTTAACCATTACGGAAGCCCTATCATATATCATGAGAGTGAGGGAAAGATTTCAAGAAAACCGGGAAAAGTTTGAAGCT
TTCCTTCGAGTAATCCAAGATTTCAAGGCCCAAAGAGTTGATACTTCGGAACTCTTTGCAAAAATAATGGACATGTTTCAAGACCACCCAGATCTTATTATGGGC
TTCGCTACTTTCTTGCCCGCAAAACCCCTGGAGGATGATCAACATCCACCTCCACAAAACAAATAA
Protein sequenceShow/hide protein sequence
MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLPAKPLEDDQHPPPQNK