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CcUC01G005490 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G005490
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionCDGSH iron-sulfur domain-containing protein NEET
Genome locationCicolChr01:5467987..5469377
RNA-Seq ExpressionCcUC01G005490
SyntenyCcUC01G005490
Gene Ontology termsGO:0010506 - regulation of autophagy (biological process)
GO:0005741 - mitochondrial outer membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR018967 - Iron-binding zinc finger, CDGSH type
IPR042216 - MitoNEET, CDGSH iron-sulfur domain
IPR045131 - CDGSH iron-sulfur domain-containing protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605678.1 CDGSH iron-sulfur domain-containing protein NEET, partial [Cucurbita argyrosperma subsp. sororia]2.8e-3272.12Show/hide
Query:  ISAPSSLPIRSHPPHPNFNA------RRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPL
        + A S+LP  + PPH NF        R +VVVRAE   GG+ INPAIRK+EDKVVDSVV+  L+KPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPL
Subjt:  ISAPSSLPIRSHPPHPNFNA------RRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPL

Query:  LLKK
        LLKK
Subjt:  LLKK

XP_004143713.1 CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus]3.5e-3879.63Show/hide
Query:  MASILPISAP-SSLPIRSHPPHPNFN---ARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDN
        MASILPIS+P SSL  R H    NFN    RR VVVRAEGGS GE INPAIRK+EDKVVDSV++ +LSKPLTPYCRCWRS TFPLCDGSHVKHNKATGDN
Subjt:  MASILPISAP-SSLPIRSHPPHPNFN---ARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

XP_022996357.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima]5.2e-3475.73Show/hide
Query:  ISAPSSLPIRSHPPHPNFNA-----RRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        ++A S+LP  + PPH NF       RRMVVVRAE   GGE INPAIRK+EDKVVDSVV+  L+KPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  ISAPSSLPIRSHPPHPNFNA-----RRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKK
        LKK
Subjt:  LKK

XP_023534172.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita pepo subsp. pepo]1.2e-3375.73Show/hide
Query:  ISAPSSLPIRSHPPHPNFN-----ARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        + A S+LP  + PPH NF       RRMVVVRAE   GGE INPAIRK+EDKVVDSVV+  L+KPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  ISAPSSLPIRSHPPHPNFN-----ARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKK
        LKK
Subjt:  LKK

XP_038876467.1 CDGSH iron-sulfur domain-containing protein NEET [Benincasa hispida]7.0e-3980.37Show/hide
Query:  MASILPISAPSSLPIRSHPPHPNF---NARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNV
        MASI+ IS PSSL I S PPH NF     R  VVVRA+ GSGGEPINPAIRK EDKVVDSV+I +LSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNV
Subjt:  MASILPISAPSSLPIRSHPPHPNF---NARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNV

Query:  GPLLLKK
        GPLLLK+
Subjt:  GPLLLKK

TrEMBL top hitse value%identityAlignment
A0A0A0KL88 ZnF_CDGSH domain-containing protein1.7e-3879.63Show/hide
Query:  MASILPISAP-SSLPIRSHPPHPNFN---ARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDN
        MASILPIS+P SSL  R H    NFN    RR VVVRAEGGS GE INPAIRK+EDKVVDSV++ +LSKPLTPYCRCWRS TFPLCDGSHVKHNKATGDN
Subjt:  MASILPISAP-SSLPIRSHPPHPNFN---ARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

A0A1S3CTC1 CDGSH iron-sulfur domain-containing protein NEET1.4e-3275.23Show/hide
Query:  MASILPISAP-SSLPIRSHPPHP-NFN---ARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGD
        MASI+ IS+P SSL  R+    P +FN    RR VVVRAE GS GE INPAIRK+E+KVVDSV+I +LSKPLTPYCRCWRS TFPLCDGSHVKHNKATGD
Subjt:  MASILPISAP-SSLPIRSHPPHP-NFN---ARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGD

Query:  NVGPLLLKK
        NVGPLLLKK
Subjt:  NVGPLLLKK

A0A5A7UKN7 CDGSH iron-sulfur domain-containing protein NEET1.4e-3275.23Show/hide
Query:  MASILPISAP-SSLPIRSHPPHP-NFN---ARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGD
        MASI+ IS+P SSL  R+    P +FN    RR VVVRAE GS GE INPAIRK+E+KVVDSV+I +LSKPLTPYCRCWRS TFPLCDGSHVKHNKATGD
Subjt:  MASILPISAP-SSLPIRSHPPHP-NFN---ARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGD

Query:  NVGPLLLKK
        NVGPLLLKK
Subjt:  NVGPLLLKK

A0A6J1H2X5 CDGSH iron-sulfur domain-containing protein NEET1.8e-3272.12Show/hide
Query:  ISAPSSLPIRSHPPHPNFNA------RRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPL
        + A S+LP  + PPH NF        R +VVVRAE   GG+ INPAIRK+EDKVVDSVV+  L+KPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPL
Subjt:  ISAPSSLPIRSHPPHPNFNA------RRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPL

Query:  LLKK
        LLKK
Subjt:  LLKK

A0A6J1K1P5 CDGSH iron-sulfur domain-containing protein NEET2.5e-3475.73Show/hide
Query:  ISAPSSLPIRSHPPHPNFNA-----RRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        ++A S+LP  + PPH NF       RRMVVVRAE   GGE INPAIRK+EDKVVDSVV+  L+KPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  ISAPSSLPIRSHPPHPNFNA-----RRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKK
        LKK
Subjt:  LKK

SwissProt top hitse value%identityAlignment
B9EPI1 CDGSH iron-sulfur domain-containing protein 2A1.0e-1659.68Show/hide
Query:  INPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK
        IN  I+K   KVV+ + I+ L +    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK
Subjt:  INPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK

C1BI29 CDGSH iron-sulfur domain-containing protein 2A7.8e-1759.68Show/hide
Query:  INPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK
        IN  I+K   KVV+ + I+ L++    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK
Subjt:  INPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK

Q6PCF8 CDGSH iron-sulfur domain-containing protein 2A1.0e-1661.29Show/hide
Query:  INPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK
        IN  I+K   KVV+ + I+ L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK
Subjt:  INPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK

Q7T326 CDGSH iron-sulfur domain-containing protein 23.5e-1761.29Show/hide
Query:  INPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK
        IN  I+K   KVV+ + I+ L  P   YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK
Subjt:  INPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK

Q9FLI7 CDGSH iron-sulfur domain-containing protein NEET1.9e-3182.05Show/hide
Query:  RRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK
        +RMVVVRAEGG G   INP IRK EDKVVDSVV+ +LSK +TPYCRCWRS TFPLCDGSHVKHNKA GDNVGPLLLKK
Subjt:  RRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK

Arabidopsis top hitse value%identityAlignment
AT5G51720.1 2 iron, 2 sulfur cluster binding1.4e-3282.05Show/hide
Query:  RRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK
        +RMVVVRAEGG G   INP IRK EDKVVDSVV+ +LSK +TPYCRCWRS TFPLCDGSHVKHNKA GDNVGPLLLKK
Subjt:  RRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCATTCTACCCATTTCTGCACCTTCTTCCTTACCAATAAGAAGCCATCCTCCTCATCCTAATTTCAACGCCCGTCGTATGGTGGTTGTAAGAGCTGAAGGCGG
CAGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGGCAGAGGACAAAGTGGTGGACTCTGTCGTCATCGATCAACTTTCCAAGCCCCTCACTCCTTATTGCCGATGTT
GGAGGTCAGCTACATTTCCTCTTTGTGATGGAAGCCATGTTAAGCACAACAAGGCAACTGGGGATAATGTTGGTCCTTTGCTCTTAAAGAAGTAG
mRNA sequenceShow/hide mRNA sequence
TTTCAGTACTTCACCACACCAACACATCTCTGCAAATTATTGCACAATGGCGTCCATTCTACCCATTTCTGCACCTTCTTCCTTACCAATAAGAAGCCATCCTCCTCATC
CTAATTTCAACGCCCGTCGTATGGTGGTTGTAAGAGCTGAAGGCGGCAGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGGCAGAGGACAAAGTGGTGGACTCTGTC
GTCATCGATCAACTTTCCAAGCCCCTCACTCCTTATTGCCGATGTTGGAGGTCAGCTACATTTCCTCTTTGTGATGGAAGCCATGTTAAGCACAACAAGGCAACTGGGGA
TAATGTTGGTCCTTTGCTCTTAAAGAAGTAGTAGACATTATATTCTCAATTTTTCTTTTTCTTTTTCCAAGCTCGCATGAGTGTCTAATGTACT
Protein sequenceShow/hide protein sequence
MASILPISAPSSLPIRSHPPHPNFNARRMVVVRAEGGSGGEPINPAIRKAEDKVVDSVVIDQLSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK