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CcUC01G005690 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G005690
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionprotein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like
Genome locationCicolChr01:5717518..5723364
RNA-Seq ExpressionCcUC01G005690
SyntenyCcUC01G005690
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR006936 - ALOG domain
IPR040222 - ALOG family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1202527.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Morella rubra]8.8e-0873.91Show/hide
Query:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        PSSTTTPSRYENQK +D NTF Q L+NH+PPL+L M S A VLEFL
Subjt:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

PWA82293.1 hypothetical protein CTI12_AA178370 [Artemisia annua]6.7e-0876.09Show/hide
Query:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        PSSTTTPSRYENQK +D NTF Q L+NHRPPLAL   S A VLEFL
Subjt:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

XP_022946684.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita moschata]2.3e-0880Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S A VLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

XP_022999096.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima]2.3e-0880Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S A VLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

XP_023546935.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo]2.3e-0880Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S A VLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

TrEMBL top hitse value%identityAlignment
A0A2U1P957 ALOG domain-containing protein3.3e-0876.09Show/hide
Query:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        PSSTTTPSRYENQK +D NTF Q L+NHRPPLAL   S A VLEFL
Subjt:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

A0A5D3BFP5 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like7.2e-0848.24Show/hide
Query:  SKDDSNSANPSSLNTIVEVCGIQLGQVSCQLPHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        S+  SN+ NP++  T                P        +S TTPSRYENQK +D NTF Q L+NHRPPLALQM S A VLEFL
Subjt:  SKDDSNSANPSSLNTIVEVCGIQLGQVSCQLPHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

A0A6A1URV5 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 14.2e-0873.91Show/hide
Query:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        PSSTTTPSRYENQK +D NTF Q L+NH+PPL+L M S A VLEFL
Subjt:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

A0A6J1G4J5 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like1.1e-0880Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S A VLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

A0A6J1KC51 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like1.1e-0880Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S A VLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

SwissProt top hitse value%identityAlignment
B8AH02 Protein G1-like31.7e-0668.29Show/hide
Query:  TPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        TPSRYE QK +D NTF Q L+NHRPPL L   S A VLEFL
Subjt:  TPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

Q6NNI3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 12.7e-0759.26Show/hide
Query:  PHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        P+   QL P S+   SRYENQK +D NTF Q L+NHRPPL+L   S A VLEFL
Subjt:  PHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

Q9FGH2 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 54.5e-0762.22Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        SS+++PSRYE+QK +D NTF Q L+NH+PPL L   S A VLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

Q9LMK2 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 64.5e-0762.22Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        S   TPSRYE+QK +D NTF Q L+NH+PPLAL   S A V+EFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

Q9LW68 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 41.3e-0664.44Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        S T   SRYENQK +D NTF Q L+NHRPPL+L   S A VLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

Arabidopsis top hitse value%identityAlignment
AT1G07090.1 Protein of unknown function (DUF640)3.2e-0862.22Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        S   TPSRYE+QK +D NTF Q L+NH+PPLAL   S A V+EFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

AT2G31160.1 Protein of unknown function (DUF640)1.6e-0762.22Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        S +   SRYENQK +D NTF Q L+NHRPPL+L   S A VLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

AT3G23290.2 Protein of unknown function (DUF640)9.3e-0864.44Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        S T   SRYENQK +D NTF Q L+NHRPPL+L   S A VLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

AT5G28490.1 Protein of unknown function (DUF640)1.9e-0859.26Show/hide
Query:  PHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        P+   QL P S+   SRYENQK +D NTF Q L+NHRPPL+L   S A VLEFL
Subjt:  PHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL

AT5G58500.1 Protein of unknown function (DUF640)3.2e-0862.22Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL
        SS+++PSRYE+QK +D NTF Q L+NH+PPL L   S A VLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGGAAGGGTCCAAATCTCAAGTTAATCCTCAAAGCGGTTGGGATCCTCAGAATTAGACCATCCCTCTCAAGGTTTCAAAGATTCACCATCATTCTACCGGATTC
TTCAATCAAGATCAGGAAAAGTATTCCCTGCCTTTCTTCCCCAAAATGCCCCTTGTCTCCAATAGATTCAAAAGATGATTCAAACTCAGCAAATCCTTCTAGCCTTAACA
CAATAGTGGAAGTTTGTGGGATCCAATTGGGTCAAGTTTCTTGTCAATTGCCTCATCAGCGCCGCCAGTTGTTTCCGTCGTCCACCACCACCCCAAGCCGATACGAGAAC
CAAAAATGGAAAGATTCAAACACATTCTATCAAAACCTTCAGAACCACCGGCCACCATTGGCTCTGCAGATGTACAGCAGCGCTCGCGTGCTGGAATTTCTGGTTACTCA
GTGGCAGATATCCAGAGTCATTCACTTGAGTGGCTCTAATGCTCAAGTTCCGACTCGAACCCCATTTTGGGAATGTTCCTTCAGTAGGGCTATTTTTCGCAATATTACTG
CTCTTACTATGGACGCCGGTGGGGGATGTGGAGGGGAAAACGGCGGCGGTGCAAACACAGGTGGAAGTGATTTGGCGGGGGACAACCGAAAAAGGTTGGTTGCGGTGAAC
GAACAATGGAAGAACCCGACGGAACGCGACATGAGGAACCTTAATCATCATCATCAAAGTCTTAGCCGCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGGAAGGGTCCAAATCTCAAGTTAATCCTCAAAGCGGTTGGGATCCTCAGAATTAGACCATCCCTCTCAAGGTTTCAAAGATTCACCATCATTCTACCGGATTC
TTCAATCAAGATCAGGAAAAGTATTCCCTGCCTTTCTTCCCCAAAATGCCCCTTGTCTCCAATAGATTCAAAAGATGATTCAAACTCAGCAAATCCTTCTAGCCTTAACA
CAATAGTGGAAGTTTGTGGGATCCAATTGGGTCAAGTTTCTTGTCAATTGCCTCATCAGCGCCGCCAGTTGTTTCCGTCGTCCACCACCACCCCAAGCCGATACGAGAAC
CAAAAATGGAAAGATTCAAACACATTCTATCAAAACCTTCAGAACCACCGGCCACCATTGGCTCTGCAGATGTACAGCAGCGCTCGCGTGCTGGAATTTCTGGTTACTCA
GTGGCAGATATCCAGAGTCATTCACTTGAGTGGCTCTAATGCTCAAGTTCCGACTCGAACCCCATTTTGGGAATGTTCCTTCAGTAGGGCTATTTTTCGCAATATTACTG
CTCTTACTATGGACGCCGGTGGGGGATGTGGAGGGGAAAACGGCGGCGGTGCAAACACAGGTGGAAGTGATTTGGCGGGGGACAACCGAAAAAGGTTGGTTGCGGTGAAC
GAACAATGGAAGAACCCGACGGAACGCGACATGAGGAACCTTAATCATCATCATCAAAGTCTTAGCCGCAGCTGA
Protein sequenceShow/hide protein sequence
MSGKGPNLKLILKAVGILRIRPSLSRFQRFTIILPDSSIKIRKSIPCLSSPKCPLSPIDSKDDSNSANPSSLNTIVEVCGIQLGQVSCQLPHQRRQLFPSSTTTPSRYEN
QKWKDSNTFYQNLQNHRPPLALQMYSSARVLEFLVTQWQISRVIHLSGSNAQVPTRTPFWECSFSRAIFRNITALTMDAGGGCGGENGGGANTGGSDLAGDNRKRLVAVN
EQWKNPTERDMRNLNHHHQSLSRS