; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G005930 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G005930
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCicolChr01:5932625..5941756
RNA-Seq ExpressionCcUC01G005930
SyntenyCcUC01G005930
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW35321.1 hypothetical protein CK203_098706 [Vitis vinifera]3.4e-0431.85Show/hide
Query:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFE---------FQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEG
        VRSL  G  +++  + S  A G ILV WD  L +L +V  GEFSI+  F+         F  + AG F +V++       R     L    R F +   G
Subjt:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFE---------FQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEG

Query:  LKLLQIIGLFNSEHRKCGL--GPCPFKFDNMWLSQ
        +    +   F       G+  GP PF+F+NMWL +
Subjt:  LKLLQIIGLFNSEHRKCGL--GPCPFKFDNMWLSQ

RVW72662.1 hypothetical protein CK203_056563 [Vitis vinifera]4.1e-0532.35Show/hide
Query:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFEFQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLKLL-----
        V S+W G +VE   L +  A G I+++WD S  +  E ++G FSIT+  +F   + GSF L       V+  ++ L     R+DF  +L+ L  L     
Subjt:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFEFQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLKLL-----

Query:  --QIIGLFNSEHRKCGL-------GPCPFKFDNMWL
          + +  + S+H    L       GP PF+F+NMWL
Subjt:  --QIIGLFNSEHRKCGL-------GPCPFKFDNMWL

RVW96808.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]5.3e-0528.68Show/hide
Query:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFE-------FQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLK
        V S+W G +VE + L +  A G I+++WD S  +  E ++G FS+T+ F           L+  +FT    Q   +  RLD          F  +     
Subjt:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFE-------FQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLK

Query:  LLQIIGLFNSEHRKCGL-------GPCPFKFDNMWL
          + +  + S+H    L       GP PF+F+NMWL
Subjt:  LLQIIGLFNSEHRKCGL-------GPCPFKFDNMWL

RVX09324.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]5.3e-0531.62Show/hide
Query:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFEFQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLKLL-----
        V S+W G +VE   L +  A G I+++WD S  +  E ++G FS+T+  +F   + GSF L       V+  ++ L     R+DF  +L+ L  L     
Subjt:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFEFQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLKLL-----

Query:  --QIIGLFNSEHRKCGL-------GPCPFKFDNMWL
          + +  + S+H    L       GP PF+F+NMWL
Subjt:  --QIIGLFNSEHRKCGL-------GPCPFKFDNMWL

TrEMBL top hitse value%identityAlignment
A0A438DIN8 Uncharacterized protein1.7e-0431.85Show/hide
Query:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFE---------FQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEG
        VRSL  G  +++  + S  A G ILV WD  L +L +V  GEFSI+  F+         F  + AG F +V++       R     L    R F +   G
Subjt:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFE---------FQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEG

Query:  LKLLQIIGLFNSEHRKCGL--GPCPFKFDNMWLSQ
        +    +   F       G+  GP PF+F+NMWL +
Subjt:  LKLLQIIGLFNSEHRKCGL--GPCPFKFDNMWLSQ

A0A438GKF3 Reverse transcriptase domain-containing protein2.0e-0532.35Show/hide
Query:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFEFQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLKLL-----
        V S+W G +VE   L +  A G I+++WD S  +  E ++G FSIT+  +F   + GSF L       V+  ++ L     R+DF  +L+ L  L     
Subjt:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFEFQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLKLL-----

Query:  --QIIGLFNSEHRKCGL-------GPCPFKFDNMWL
          + +  + S+H    L       GP PF+F+NMWL
Subjt:  --QIIGLFNSEHRKCGL-------GPCPFKFDNMWL

A0A438IJB1 Transposon TX1 uncharacterized 149 kDa protein2.6e-0528.68Show/hide
Query:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFE-------FQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLK
        V S+W G +VE + L +  A G I+++WD S  +  E ++G FS+T+ F           L+  +FT    Q   +  RLD          F  +     
Subjt:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFE-------FQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLK

Query:  LLQIIGLFNSEHRKCGL-------GPCPFKFDNMWL
          + +  + S+H    L       GP PF+F+NMWL
Subjt:  LLQIIGLFNSEHRKCGL-------GPCPFKFDNMWL

A0A438JK46 LINE-1 retrotransposable element ORF2 protein2.6e-0531.62Show/hide
Query:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFEFQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLKLL-----
        V S+W G +VE   L +  A G I+++WD S  +  E ++G FS+T+  +F   + GSF L       V+  ++ L     R+DF  +L+ L  L     
Subjt:  VRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFEFQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLKLL-----

Query:  --QIIGLFNSEHRKCGL-------GPCPFKFDNMWL
          + +  + S+H    L       GP PF+F+NMWL
Subjt:  --QIIGLFNSEHRKCGL-------GPCPFKFDNMWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGTGAGGAGCCTTTGGGGAGGTAGTCAAGTTGAGCGAATGGGGTTAGAGTCTGTTGAAGCCTTGGGGAAAATCCTTGTGATGTGGGACCAGAGTCTATCT
AAGTTGCCAGAGGTCTTGGTAGGTGAGTTTTCTATTACAATGGCTTTTGAGTTCCAAGATTTGAAGGCGGGGTCGTTTACTTTGGTCAAGTGGCAGGGAAGAGTG
GTGTTTTGTAGACTAGATAGTCTCTCTCTCAGGGGTGGCAGGAGGGATTTCCGAGACAAGTTAGAGGGCTTAAAACTTCTTCAGATCATTGGTCTGTTTAATTCT
GAACATCGGAAGTGTGGTTTGGGTCCATGCCCATTCAAATTTGATAACATGTGGTTGTCCCAACTCTGTCTCGTGGTGGAGGGCGAAGTGGTGTGTCTTTTCTCG
TCAAATGAAGATCTTGACCATTGGGGTTGCAAGCTTGCTTGTTCCCTGTGGAGTGAACATTTTATGACGTTGGAGGCTGTATTGCCTGTTGCTGAAGTTGCTGCC
TCAACTGTATCTGCTGCTGCTGCTGCATATGAGCTCTCTGCAAAGGAGGTAAAGACTGAAAAATTTGTTGCTGTTGTCGTAATCTCTGTTGCTGCTGAAATAATG
CTGCTTGTAACTGAGGTGTATTACGACCTTGCAATTGCATGGAATCTTGTCTCTGCAGTAGCTGTTGTAGTACCTGCTGTTGCAGAAAATCATCCTGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGTGAGGAGCCTTTGGGGAGGTAGTCAAGTTGAGCGAATGGGGTTAGAGTCTGTTGAAGCCTTGGGGAAAATCCTTGTGATGTGGGACCAGAGTCTATCT
AAGTTGCCAGAGGTCTTGGTAGGTGAGTTTTCTATTACAATGGCTTTTGAGTTCCAAGATTTGAAGGCGGGGTCGTTTACTTTGGTCAAGTGGCAGGGAAGAGTG
GTGTTTTGTAGACTAGATAGTCTCTCTCTCAGGGGTGGCAGGAGGGATTTCCGAGACAAGTTAGAGGGCTTAAAACTTCTTCAGATCATTGGTCTGTTTAATTCT
GAACATCGGAAGTGTGGTTTGGGTCCATGCCCATTCAAATTTGATAACATGTGGTTGTCCCAACTCTGTCTCGTGGTGGAGGGCGAAGTGGTGTGTCTTTTCTCG
TCAAATGAAGATCTTGACCATTGGGGTTGCAAGCTTGCTTGTTCCCTGTGGAGTGAACATTTTATGACGTTGGAGGCTGTATTGCCTGTTGCTGAAGTTGCTGCC
TCAACTGTATCTGCTGCTGCTGCTGCATATGAGCTCTCTGCAAAGGAGGTAAAGACTGAAAAATTTGTTGCTGTTGTCGTAATCTCTGTTGCTGCTGAAATAATG
CTGCTTGTAACTGAGGTGTATTACGACCTTGCAATTGCATGGAATCTTGTCTCTGCAGTAGCTGTTGTAGTACCTGCTGTTGCAGAAAATCATCCTGCTTAA
Protein sequenceShow/hide protein sequence
MRVRSLWGGSQVERMGLESVEALGKILVMWDQSLSKLPEVLVGEFSITMAFEFQDLKAGSFTLVKWQGRVVFCRLDSLSLRGGRRDFRDKLEGLKLLQIIGLFNS
EHRKCGLGPCPFKFDNMWLSQLCLVVEGEVVCLFSSNEDLDHWGCKLACSLWSEHFMTLEAVLPVAEVAASTVSAAAAAYELSAKEVKTEKFVAVVVISVAAEIM
LLVTEVYYDLAIAWNLVSAVAVVVPAVAENHPA