; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G006460 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G006460
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionMediator of RNA polymerase II transcription subunit
Genome locationCicolChr01:6749523..6749987
RNA-Seq ExpressionCcUC01G006460
SyntenyCcUC01G006460
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046315.1 uncharacterized protein E6C27_scaffold149G00240 [Cucumis melo var. makuwa]7.6e-5072.33Show/hide
Query:  MKSINSIAFSFSSTNSASFLLPPSPSGHRLRRLPVAVTIRASSRSSADNNNN-------YYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR
        MKSINS++FS     + S L  P+P  H  R+   AVT+RAS   +ADNNNN       YYA GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKR
Subjt:  MKSINSIAFSFSSTNSASFLLPPSPSGHRLRRLPVAVTIRASSRSSADNNNN-------YYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR

Query:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA
        YYS+YDSHICEALGYLQSHLMNTRPSVALGMLL+II+SVPLSS LLLHRFF IA ALLA
Subjt:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA

XP_004150478.1 uncharacterized protein LOC101215395 [Cucumis sativus]3.5e-4769.81Show/hide
Query:  MKSINSIAFSFSSTNSASFLLPPSPSGHRLRRLPVAVTIRASSRSSAD-------NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR
        M+SINS++FS  S      L  P+   H  R+   AVT+RAS   +AD       NNNNYYA GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKR
Subjt:  MKSINSIAFSFSSTNSASFLLPPSPSGHRLRRLPVAVTIRASSRSSAD-------NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR

Query:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA
        +YS+YDSHICEALGYLQSHLMNTRPSVALGMLL+II+SVPLSS LLLHRF  IA ALLA
Subjt:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA

XP_022989988.1 uncharacterized protein LOC111487016 [Cucurbita maxima]2.1e-4770.78Show/hide
Query:  MKSINSIAFSFSSTNSASFLLPP-SPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNY
        M SINS+  S  ST+SA  L PP SPS HR RR P A T+ ASSR     ++N+YYA GK+VDESMIVLRKRIHEIK AEQ+HDPP DWFDWEKR YSNY
Subjt:  MKSINSIAFSFSSTNSASFLLPP-SPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNY

Query:  DSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA
        DS+ICEALGYLQSHLMNTRPSVALGML ++ LSVP+SS ++LHRF +IA  LLA
Subjt:  DSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA

XP_022993164.1 uncharacterized protein LOC111489262 [Cucurbita maxima]9.3e-4873.83Show/hide
Query:  SFSSTNSASFL--LPPSPSGHRLRRLPVAVTIRAS----SRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHIC
        S SS NSA FL   P SPS  R RRLP+   I +S    S SS +NNNNYYASGK+VDESMIVLRKRIHEIKM EQSH+PP+DW DWEKR YS+YDSHIC
Subjt:  SFSSTNSASFL--LPPSPSGHRLRRLPVAVTIRAS----SRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHIC

Query:  EALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA
        EALGYLQSHLMNTRPSV+LG+LL+I LSVPLSS ++LHRF  IAAALLA
Subjt:  EALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA

XP_038875502.1 uncharacterized protein LOC120067929 [Benincasa hispida]6.2e-6084.97Show/hide
Query:  MKSINSIAFSFSSTNSASFLLPPSPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYD
        MKSINS+  S SSTNSA FL  PS S HR RRLP+AVT+ ASSRSSAD NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSH+PPADW DWEKRYYS+YD
Subjt:  MKSINSIAFSFSSTNSASFLLPPSPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYD

Query:  SHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA
        SHICEALGYLQ+HLMNTRPSVALGMLL+I LSVP SS +LLHRFFQIAAALLA
Subjt:  SHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA

TrEMBL top hitse value%identityAlignment
A0A0A0KPI5 Uncharacterized protein1.7e-4769.81Show/hide
Query:  MKSINSIAFSFSSTNSASFLLPPSPSGHRLRRLPVAVTIRASSRSSAD-------NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR
        M+SINS++FS  S      L  P+   H  R+   AVT+RAS   +AD       NNNNYYA GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKR
Subjt:  MKSINSIAFSFSSTNSASFLLPPSPSGHRLRRLPVAVTIRASSRSSAD-------NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR

Query:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA
        +YS+YDSHICEALGYLQSHLMNTRPSVALGMLL+II+SVPLSS LLLHRF  IA ALLA
Subjt:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA

A0A5A7TY46 Uncharacterized protein3.7e-5072.33Show/hide
Query:  MKSINSIAFSFSSTNSASFLLPPSPSGHRLRRLPVAVTIRASSRSSADNNNN-------YYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR
        MKSINS++FS     + S L  P+P  H  R+   AVT+RAS   +ADNNNN       YYA GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKR
Subjt:  MKSINSIAFSFSSTNSASFLLPPSPSGHRLRRLPVAVTIRASSRSSADNNNN-------YYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR

Query:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA
        YYS+YDSHICEALGYLQSHLMNTRPSVALGMLL+II+SVPLSS LLLHRFF IA ALLA
Subjt:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA

A0A6J1GM73 uncharacterized protein LOC1114552462.2e-4770.13Show/hide
Query:  MKSINSIAFSFSSTNSASFLLPP-SPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNY
        M SINS+  S  ST+SA  L PP SPS HR RR P A T+ ASS+     ++N+YYA GK+VDESMIVLRKRIHEIK AEQ+HDPP DWFDWEKR YSNY
Subjt:  MKSINSIAFSFSSTNSASFLLPP-SPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNY

Query:  DSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA
        DS+ICEALGYLQSHLMNTRPSVALGML ++ LSVP+SS ++LHRF +IA  LLA
Subjt:  DSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA

A0A6J1JRY7 uncharacterized protein LOC1114870161.0e-4770.78Show/hide
Query:  MKSINSIAFSFSSTNSASFLLPP-SPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNY
        M SINS+  S  ST+SA  L PP SPS HR RR P A T+ ASSR     ++N+YYA GK+VDESMIVLRKRIHEIK AEQ+HDPP DWFDWEKR YSNY
Subjt:  MKSINSIAFSFSSTNSASFLLPP-SPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNY

Query:  DSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA
        DS+ICEALGYLQSHLMNTRPSVALGML ++ LSVP+SS ++LHRF +IA  LLA
Subjt:  DSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA

A0A6J1JZG1 uncharacterized protein LOC1114892624.5e-4873.83Show/hide
Query:  SFSSTNSASFL--LPPSPSGHRLRRLPVAVTIRAS----SRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHIC
        S SS NSA FL   P SPS  R RRLP+   I +S    S SS +NNNNYYASGK+VDESMIVLRKRIHEIKM EQSH+PP+DW DWEKR YS+YDSHIC
Subjt:  SFSSTNSASFL--LPPSPSGHRLRRLPVAVTIRAS----SRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHIC

Query:  EALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA
        EALGYLQSHLMNTRPSV+LG+LL+I LSVPLSS ++LHRF  IAAALLA
Subjt:  EALGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G15010.1 unknown protein1.1e-2547.97Show/hide
Query:  IRASSRSSADNNN--------NYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIIL
        +R S R +   N         +YY  G+ VDE+M+VLRKRIHE+KM E++ +PP+ W  WEKR+Y NYD+ IC+AL  LQ+ LMN+RPSVA G  L++++
Subjt:  IRASSRSSADNNN--------NYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIIL

Query:  SVPLSSVLLLHRFFQIAAALLAA
        SVP+SS +   R   +A  LL A
Subjt:  SVPLSSVLLLHRFFQIAAALLAA

AT2G01300.1 unknown protein6.1e-2946.58Show/hide
Query:  FLLPPSPSGHRLRRLPVA----------VTIRASSRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGY
        F  PPS S  R   L ++          +T+R S+ +S+   ++YY  G++VDE+MIVLRKRIHE+KM E++++PP+ W DWEKR+Y++YDS IC+++G 
Subjt:  FLLPPSPSGHRLRRLPVA----------VTIRASSRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGY

Query:  LQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLAAA
        LQS LMN+RP+VA+  LL +++SVP+SS ++  R   +   LLAAA
Subjt:  LQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLAAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCCATTAATTCCATCGCCTTCTCATTCTCCTCCACCAATTCCGCTTCCTTCCTCCTCCCTCCCTCTCCCTCCGGCCACCGCCTCCGCCGCCTACCAGTG
GCTGTAACCATCAGAGCATCGTCTCGATCGTCAGCCGACAACAACAATAATTACTACGCAAGCGGGAAAGTGGTGGACGAGAGCATGATCGTTCTCCGAAAACGA
ATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCCGATTGGTTTGATTGGGAAAAACGGTATTATTCCAATTACGATTCTCATATCTGCGAAGCT
TTAGGCTATCTTCAATCTCATTTGATGAATACTCGACCTAGCGTGGCTTTGGGAATGCTCCTTATTATAATCCTCAGCGTTCCTCTTTCCTCCGTCCTCCTTCTC
CACCGCTTCTTCCAAATCGCCGCCGCGCTTCTCGCCGCCGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCCATTAATTCCATCGCCTTCTCATTCTCCTCCACCAATTCCGCTTCCTTCCTCCTCCCTCCCTCTCCCTCCGGCCACCGCCTCCGCCGCCTACCAGTG
GCTGTAACCATCAGAGCATCGTCTCGATCGTCAGCCGACAACAACAATAATTACTACGCAAGCGGGAAAGTGGTGGACGAGAGCATGATCGTTCTCCGAAAACGA
ATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCCGATTGGTTTGATTGGGAAAAACGGTATTATTCCAATTACGATTCTCATATCTGCGAAGCT
TTAGGCTATCTTCAATCTCATTTGATGAATACTCGACCTAGCGTGGCTTTGGGAATGCTCCTTATTATAATCCTCAGCGTTCCTCTTTCCTCCGTCCTCCTTCTC
CACCGCTTCTTCCAAATCGCCGCCGCGCTTCTCGCCGCCGCTTAA
Protein sequenceShow/hide protein sequence
MKSINSIAFSFSSTNSASFLLPPSPSGHRLRRLPVAVTIRASSRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEA
LGYLQSHLMNTRPSVALGMLLIIILSVPLSSVLLLHRFFQIAAALLAAA