| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG6601883.1 RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. sororia] | 3.7e-118 | 70.23 | Show/hide |
Query: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
LTCI+P+KPMSYEP TIQLDHDV I+ +EY ANYMVN LG IANAHTVFADK+PKKAMSA+CI+LAKLF IAVDF KTGVPANLP +L VHEYPD
Subjt: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
Query: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKT----------------------------RGKSFD
FM KPNK TY SNGV+GKLFRGVKDVSSD+N +E FTREVA KCYDPDMEV GFE +L +AFDYK+ GKSFD
Subjt: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKT----------------------------RGKSFD
Query: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
KRND+EQI+ M+SLRKE R WFNEKGSKS Y+NNKDED+EYAK SAWYHV YHP++WGRYNEGMQRDHFLSFPWCV++KLIQIKREK M SP+SSL
Subjt: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
Query: IHKLGGLKF
IHK G L F
Subjt: IHKLGGLKF
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| KAG7032582.1 RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. argyrosperma] | 1.7e-118 | 70.23 | Show/hide |
Query: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
LTCI+P+KPMSYEP TIQLDHDV I+ +EY ANYMVN LG IANAHTVFADK+PKKAMSA+CI+LAKLF IAVDF KTGVPANLP +L VHEYPD
Subjt: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
Query: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKT----------------------------RGKSFD
FM KPNK TY+SNGV+GKLFRGVKDVSSD+N +E FTREVA KCYDPDMEV GFE +L +AFDYK+ GKSFD
Subjt: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKT----------------------------RGKSFD
Query: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
KRND+EQI+ M+SLRKE R WFNEKGSKS Y+NNKDED+EYAK SAWYHV YHP++WGRYNEGMQRDHFLSFPWCV++KLIQIKREK M SP+SSL
Subjt: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
Query: IHKLGGLKF
IHK G L F
Subjt: IHKLGGLKF
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| XP_022923210.1 probable RNA-dependent RNA polymerase 1 [Cucurbita moschata] | 3.7e-118 | 70.23 | Show/hide |
Query: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
LTCI+P+KPMSYEP TIQLDHDV I+ +EY ANYMVN LG IANAHTVFADK+PKKAMSA+CI+LAKLF IAVDF KTGVPANLP +L VHEYPD
Subjt: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
Query: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKT----------------------------RGKSFD
FM KPNK TY SNGV+GKLFRGVKDVSSD+N +E FTREVA KCYDPDMEV GFE +L +AFDYK+ GKSFD
Subjt: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKT----------------------------RGKSFD
Query: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
KRND+EQI+ M+SLRKE R WFNEKGSKS Y+NNKDED+EYAK SAWYHV YHP++WGRYNEGMQRDHFLSFPWCV++KLIQIKREK M SP+SSL
Subjt: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
Query: IHKLGGLKF
IHK G L F
Subjt: IHKLGGLKF
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| XP_023524039.1 probable RNA-dependent RNA polymerase 1 isoform X1 [Cucurbita pepo subsp. pepo] | 1.1e-117 | 69.58 | Show/hide |
Query: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
LTCI+P+KPMSYEP TIQLDHDV I+ +EY ANYMVN LG IANAHTVFADK+PKKAMSA+CI+LAKLF IAVDF KTGVPANLP +L VH+YPD
Subjt: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
Query: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKT----------------------------RGKSFD
FM KPNK +Y+SNGV+GKLFRGVKDVSSD+N +E FTREVA KCYDPDMEV GFE +L +AFDYK+ GKSFD
Subjt: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKT----------------------------RGKSFD
Query: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
KRND+EQI+ M+SLRKE R WFNEKGSKS Y+NNKDED+EYAK SAWYHV YHP++WGRYNEGMQRDHFLSFPWCV++KLIQIKREK M SP+SSL
Subjt: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
Query: IHKLGGLKF
IHK G L F
Subjt: IHKLGGLKF
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| XP_038875555.1 probable RNA-dependent RNA polymerase 1 [Benincasa hispida] | 6.8e-128 | 76.55 | Show/hide |
Query: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
LTCIKPVKPMSYEP T+QLDHDV I+ +EYLANYMVN LG IANAHTVFADK PKKAMS +CIKLAKLF IAVDF KTGVPANLP NL VHEYPD
Subjt: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
Query: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKTR----------------------------GKSFD
FM+KPNKPTY SNGVLGKLF+GVKDVSSDVNTLEIFTREVA CYDPDMEVDGF+K+L +AFDYKTR KSFD
Subjt: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKTR----------------------------GKSFD
Query: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
KRNDLEQI MKSLRKE RAWFNEKGSKSTYDN+K E+EEYAK SAWYHV YHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKT LM+ SPMSSL
Subjt: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
Query: IHKLGGL
IHK G L
Subjt: IHKLGGL
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|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3AV70 RNA-dependent RNA polymerase | 7.6e-117 | 71.99 | Show/hide |
Query: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
LTCIK VKPMSYEP +IQLDHDV I+ ++Y ANYMVN LG IANAHTVFADK KKAMSA+CIKLAKLF IAVDF KTGVPANLP NL VHEYPD
Subjt: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
Query: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKTR----------------------------GKSFD
FM+KP+KPTYVSNGVLGKLFRGVKDVSSDVNT EIFT+EVATKCYDPDMEVDGFEK+LR+AFDYKT+ KSFD
Subjt: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKTR----------------------------GKSFD
Query: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
KRNDLEQI MKSLRKEVR+WFNE SK TY++ ED+EYA+ SAWY V YHPDYWGRYNEG QRDHFLSFPWCVADKLIQIKREK SL N SPMSSL
Subjt: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
Query: IHKLGGL
+ G+
Subjt: IHKLGGL
|
|
| A0A5A7TS25 RNA-dependent RNA polymerase | 1.7e-116 | 71.34 | Show/hide |
Query: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
LTCIK VKPMSY+P TIQLDHDV I+ +++ ANYMVN LG IANAHTVFADK PKKAMSA+CIKLAKLF IAVDFSKTGVPANLP NL VHEYPD
Subjt: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
Query: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKTR----------------------------GKSFD
FM+KP+KPTYVSNGVLGKLFRGVKDVSSDVN+ EIFTREVAT+CYDPDMEVDGFEK+LR+AF YKT+ KSFD
Subjt: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKTR----------------------------GKSFD
Query: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
KRNDLEQI MKSLRKEVR+WFNE +KS YD+ KD EYA+ SAWY V YHPDYWG YNEG QRDHFLSFPWCVADKLI+IKREK SL N SPMSSL
Subjt: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
Query: IHKLGGL
+H G+
Subjt: IHKLGGL
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| A0A5D3E365 RNA-dependent RNA polymerase | 1.7e-116 | 71.34 | Show/hide |
Query: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
LTCIK VKPMSY+P TIQLDHDV I+ +++ ANYMVN LG IANAHTVFADK PKKAMSA+CIKLAKLF IAVDFSKTGVPANLP NL VHEYPD
Subjt: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
Query: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKTR----------------------------GKSFD
FM+KP+KPTYVSNGVLGKLFRGVKDVSSDVN+ EIFTREVAT+CYDPDMEVDGFEK+LR+AF YKT+ KSFD
Subjt: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKTR----------------------------GKSFD
Query: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
KRNDLEQI MKSLRKEVR+WFNE +KS YD+ KD EYA+ SAWY V YHPDYWG YNEG QRDHFLSFPWCVADKLI+IKREK SL N SPMSSL
Subjt: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
Query: IHKLGGL
+H G+
Subjt: IHKLGGL
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| A0A6J1EB47 RNA-dependent RNA polymerase | 1.8e-118 | 70.23 | Show/hide |
Query: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
LTCI+P+KPMSYEP TIQLDHDV I+ +EY ANYMVN LG IANAHTVFADK+PKKAMSA+CI+LAKLF IAVDF KTGVPANLP +L VHEYPD
Subjt: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
Query: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKT----------------------------RGKSFD
FM KPNK TY SNGV+GKLFRGVKDVSSD+N +E FTREVA KCYDPDMEV GFE +L +AFDYK+ GKSFD
Subjt: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKT----------------------------RGKSFD
Query: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
KRND+EQI+ M+SLRKE R WFNEKGSKS Y+NNKDED+EYAK SAWYHV YHP++WGRYNEGMQRDHFLSFPWCV++KLIQIKREK M SP+SSL
Subjt: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
Query: IHKLGGLKF
IHK G L F
Subjt: IHKLGGLKF
|
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| E5GB63 RNA-dependent RNA polymerase | 7.6e-117 | 71.99 | Show/hide |
Query: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
LTCIK VKPMSYEP +IQLDHDV I+ ++Y ANYMVN LG IANAHTVFADK KKAMSA+CIKLAKLF IAVDF KTGVPANLP NL VHEYPD
Subjt: LTCIKPVKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPD
Query: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKTR----------------------------GKSFD
FM+KP+KPTYVSNGVLGKLFRGVKDVSSDVNT EIFT+EVATKCYDPDMEVDGFEK+LR+AFDYKT+ KSFD
Subjt: FMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDYKTR----------------------------GKSFD
Query: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
KRNDLEQI MKSLRKEVR+WFNE SK TY++ ED+EYA+ SAWY V YHPDYWGRYNEG QRDHFLSFPWCVADKLIQIKREK SL N SPMSSL
Subjt: KRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSL
Query: IHKLGGL
+ G+
Subjt: IHKLGGL
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| O82504 RNA-dependent RNA polymerase 2 | 7.8e-34 | 32.77 | Show/hide |
Query: PMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKP
PM Y + +DHDV ++ ++ +YM++ +LG I+ AH V AD++P+KA S KC++LA L AVDF+KTG PA +P+ L E+PDF+ + KP
Subjt: PMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKP
Query: TYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHL------RDAFD----------------------YKTRGKSFDKRN----D
TY+S V GKL+R VK S + + T YD +E GFE + RD + KT+ + N D
Subjt: TYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHL------RDAFD----------------------YKTRGKSFDKRN----D
Query: L-EQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSS
+ ++I +K L KE WF + + +DE ++ SAWY+V Y+P N ++ FLSFPW V D L+ IK E + +S
Subjt: L-EQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSS
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| Q0DXS3 Probable RNA-dependent RNA polymerase 1 | 3.1e-67 | 47.65 | Show/hide |
Query: VKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPN
V PM Y P T LDHDV I+ EEY NY+VN SLG IANAH VFADKE KA S+ CI+LAKLF IAVDF KTGVPA +P L V EYPDFM K +
Subjt: VKPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPN
Query: KPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKH------LRDAFDYK----------------------TRGKSFDKRNDLE
K TY S GV+GKL+R +K + + + FTREVA + YD DM VDG+E + L+D +D+K K+F K++D +
Subjt: KPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKH------LRDAFDYK----------------------TRGKSFDKRNDLE
Query: QINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSLIHKL
I ++SLRKE R+ F+E S DN D AK SAWYHV YHP++WG YNEG +R HF+SFPWC+ +KL++IK+ + + P +H L
Subjt: QINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSLIHKL
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| Q7XM31 Probable RNA-dependent RNA polymerase 2 | 9.2e-35 | 33.68 | Show/hide |
Query: PMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKP
PM Y T +DH V ++ +++ +YM+N SLG I+ AH + AD+ P KA S +C++LA L +AVDF+KTG PA +P L EYPDFM + KP
Subjt: PMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKP
Query: TYVSNGVLGKLFR---GVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDY--------------------------KTRGKSFDKRND---
Y+SNGVLGKL+R G + S D L + + + YDPD+EV G ++ L+ A +Y R K + D
Subjt: TYVSNGVLGKLFR---GVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAFDY--------------------------KTRGKSFDKRND---
Query: ----LEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIK
++I + +L +E R W +++ E++ SAWY V YHPD + F SFPW D L+ IK
Subjt: ----LEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIK
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| Q9LQV2 RNA-dependent RNA polymerase 1 | 4.4e-69 | 51.25 | Show/hide |
Query: KPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNK
+PM Y P T LDHDV I+ EEY ANY+VN SLG IANAHT FADKEP KA S CI+LAK F AVDF KTGV A +P +L V EYPDFM KP+K
Subjt: KPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNK
Query: PTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAF------DYK----------------------TRGKSFDKRNDLEQ
PTY S V+GKLFR VK+ + + +++ FT +VA+K YD DMEVDGFE+++ +AF D+K KSF KR D E
Subjt: PTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAF------DYK----------------------TRGKSFDKRNDLEQ
Query: INCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKR
I +++LRKE + FN +++E+ E AK SAWYHV YH YWG YNEG+ RDHFLSF WCV DKL++IK+
Subjt: INCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKR
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| Q9SG02 RNA-dependent RNA polymerase 6 | 1.4e-27 | 32.98 | Show/hide |
Query: EYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKPTYVSNGVLGKLFRGVKDV-SSDVN
++ A + N LGTI NAH V AD+ AM +C+ LA+L AVDF KTG ++P +L YPDFM K + TY SN +LG+L+R VK+V D
Subjt: EYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKPTYVSNGVLGKLFRGVKDV-SSDVN
Query: TLEIFTREVATKCYDPDMEVDGFEKHLRDAF---------------DYKTRGK--------------SFDKRNDL-EQINCGMKSLRKEVRAWFNEKGSK
+ + + YD +E+ GFE + +A+ YK + + + K+ +L E++ SL+KE R F E +
Subjt: TLEIFTREVATKCYDPDMEVDGFEKHLRDAF---------------DYKTRGK--------------SFDKRNDL-EQINCGMKSLRKEVRAWFNEKGSK
Query: STYDNNKDEDEEY---AKVSAWYHVMYHPDYWGRYNEGMQRDH-----FLSFPWCVADKLIQIK---REKTSLMNFSPMSSL
++N +E++ K SAWYHV YHP++ + E D LSF W AD L +IK RE S+ + P+ SL
Subjt: STYDNNKDEDEEY---AKVSAWYHVMYHPDYWGRYNEGMQRDH-----FLSFPWCVADKLIQIK---REKTSLMNFSPMSSL
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G14790.1 RNA-dependent RNA polymerase 1 | 3.1e-70 | 51.25 | Show/hide |
Query: KPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNK
+PM Y P T LDHDV I+ EEY ANY+VN SLG IANAHT FADKEP KA S CI+LAK F AVDF KTGV A +P +L V EYPDFM KP+K
Subjt: KPMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNK
Query: PTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAF------DYK----------------------TRGKSFDKRNDLEQ
PTY S V+GKLFR VK+ + + +++ FT +VA+K YD DMEVDGFE+++ +AF D+K KSF KR D E
Subjt: PTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLRDAF------DYK----------------------TRGKSFDKRNDLEQ
Query: INCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKR
I +++LRKE + FN +++E+ E AK SAWYHV YH YWG YNEG+ RDHFLSF WCV DKL++IK+
Subjt: INCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKR
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| AT2G19910.1 RNA-dependent RNA polymerase family protein | 1.8e-06 | 24.47 | Show/hide |
Query: IANAHTVFADKEPKKAMSAK--CIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKC
I + D+ K+ K +KL +++ A+D K G +LP +L + +P +M + K + S +LG +F D N E E++
Subjt: IANAHTVFADKEPKKAMSAK--CIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKC
Query: YDPDMEVDGFEKHLRDAFDYKTRGKSFDKRNDLEQINCGMKSLRKEVRAWFNEK--GSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHF
Y D V + H+ + +S + +E L EV + + G+ D+NK +E Y + A Y+V+Y DY EG+ +
Subjt: YDPDMEVDGFEKHLRDAFDYKTRGKSFDKRNDLEQINCGMKSLRKEVRAWFNEK--GSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHF
Query: LSFPWCVADK-LIQIKREKTSLMNFSPMSSLIHKLGG
+F W VA L + +KT + +S++ KL G
Subjt: LSFPWCVADK-LIQIKREKTSLMNFSPMSSLIHKLGG
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| AT2G19920.1 RNA-dependent RNA polymerase family protein | 1.0e-04 | 25.61 | Show/hide |
Query: KKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLR
K M K +KL +++ A+D KTG NLP ++ V +P +M + NK T+ S +LG +F V +++ T ++ +C++ D V F+
Subjt: KKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHLR
Query: DAFDYKTRGKSFDKRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHV
+ R + N + +C + ++K + +++ G K ++ K +E Y K A Y+V
Subjt: DAFDYKTRGKSFDKRNDLEQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHV
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| AT3G49500.1 RNA-dependent RNA polymerase 6 | 1.0e-28 | 32.98 | Show/hide |
Query: EYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKPTYVSNGVLGKLFRGVKDV-SSDVN
++ A + N LGTI NAH V AD+ AM +C+ LA+L AVDF KTG ++P +L YPDFM K + TY SN +LG+L+R VK+V D
Subjt: EYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKPTYVSNGVLGKLFRGVKDV-SSDVN
Query: TLEIFTREVATKCYDPDMEVDGFEKHLRDAF---------------DYKTRGK--------------SFDKRNDL-EQINCGMKSLRKEVRAWFNEKGSK
+ + + YD +E+ GFE + +A+ YK + + + K+ +L E++ SL+KE R F E +
Subjt: TLEIFTREVATKCYDPDMEVDGFEKHLRDAF---------------DYKTRGK--------------SFDKRNDL-EQINCGMKSLRKEVRAWFNEKGSK
Query: STYDNNKDEDEEY---AKVSAWYHVMYHPDYWGRYNEGMQRDH-----FLSFPWCVADKLIQIK---REKTSLMNFSPMSSL
++N +E++ K SAWYHV YHP++ + E D LSF W AD L +IK RE S+ + P+ SL
Subjt: STYDNNKDEDEEY---AKVSAWYHVMYHPDYWGRYNEGMQRDH-----FLSFPWCVADKLIQIK---REKTSLMNFSPMSSL
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| AT4G11130.1 RNA-dependent RNA polymerase 2 | 5.5e-35 | 32.77 | Show/hide |
Query: PMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKP
PM Y + +DHDV ++ ++ +YM++ +LG I+ AH V AD++P+KA S KC++LA L AVDF+KTG PA +P+ L E+PDF+ + KP
Subjt: PMSYEPTLTIQLDHDVKIKVWFYEEYLANYMVNYSLGTIANAHTVFADKEPKKAMSAKCIKLAKLFFIAVDFSKTGVPANLPHNLCVHEYPDFMNKPNKP
Query: TYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHL------RDAFD----------------------YKTRGKSFDKRN----D
TY+S V GKL+R VK S + + T YD +E GFE + RD + KT+ + N D
Subjt: TYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFEKHL------RDAFD----------------------YKTRGKSFDKRN----D
Query: L-EQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSS
+ ++I +K L KE WF + + +DE ++ SAWY+V Y+P N ++ FLSFPW V D L+ IK E + +S
Subjt: L-EQINCGMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKVSAWYHVMYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSS
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