CuGenDBv2

Gene ID	CcUC01G008510
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	coiled-coil domain-containing protein 1 isoform X3
Genome location	CicolChr01:9092141..9092707
RNA-Seq Expression	CcUC01G008510
Synteny	CcUC01G008510
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579085.1 hypothetical protein SDJN03_23533, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-79

87.56

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Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGD
        +KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS+ AA  RNPRP QPH QSDSSSRPPPIENLVVDGESQSI+GD
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGD

Query:  DLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---------EDDDEEEFTSSDEDVDDRRKERRKKKA
        DLAARFAALKASLPSS TPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE         EDDD+EEF SSDED+DDR+KERRKKKA
Subjt:  DLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---------EDDDEEEFTSSDEDVDDRRKERRKKKA

KAG7016610.1 hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.1e-80

88.95

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Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGD
        +KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS+ AA  RNPRP QPH QSDSSSRPPPIENLVVDGESQSI+GD
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGD

Query:  DLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKERRKKKA
        DLAARFAALKASLPSS TPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE      EDDD+EEF SSDED+DDR+KERRKKKA
Subjt:  DLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKERRKKKA

TYK15177.1 transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa]

2.8e-78

89.01

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Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS  AAVPRNPR   PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSIIGDDLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA
        SQSI+GDDLAARFAALKASLPSS TPP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KERRKKKA
Subjt:  SQSIIGDDLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA

XP_022939254.1 nucleolin [Cucurbita moschata]

2.1e-78

90.37

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Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGD
        +KM  GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSA AA  RNPRP QPH QSDSSSRPPPIENLVVDGESQSI+GD
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGD

Query:  DLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKERRKKKA
        DLAARFAALKASLPSS TPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE   EDDD+EEF SSDED+DDR+KERRKKKA
Subjt:  DLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKERRKKKA

XP_038875163.1 uncharacterized protein LOC120067697 [Benincasa hispida]

3.6e-78

91.8

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Query:  MGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGDDL
        MG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDL+RRFQALRSRPSS TAAVPRNPRPPQPHIQSDSSSRP  IENLVVDGESQSI+GDDL
Subjt:  MGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGDDL

Query:  AARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE--EDDDEEEFTSSDEDVDDRRKERRKKK
        AARFAALKASLPSS  PPPSSIPNDVDS+DEEDEVEKLIQWAKDAARLDPSPPSE  EDD+EE+FTSSDEDVDDRRKERRKK+
Subjt:  AARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE--EDDDEEEFTSSDEDVDDRRKERRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E6L5 uncharacterized protein LOC103502866

2.3e-78

88.48

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Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDL+LKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS  AAVPRNPR   PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSIIGDDLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA
        SQSI+GDDLAARFAALKASLPSS TPP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KERRKKKA
Subjt:  SQSIIGDDLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA

A0A5A7VFP6 Transcription initiation factor TFIID subunit 11 isoform X3

8.7e-78

88.48

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Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS  AAVPRNPR   PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSIIGDDLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA
        SQSI+ DDLAARFAALKASLPSS TPP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KERRKKKA
Subjt:  SQSIIGDDLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA

A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X3

1.3e-78

89.01

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Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS  AAVPRNPR   PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSIIGDDLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA
        SQSI+GDDLAARFAALKASLPSS TPP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KERRKKKA
Subjt:  SQSIIGDDLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA

A0A6J1FGM0 nucleolin

1.0e-78

90.37

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Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGD
        +KM  GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSA AA  RNPRP QPH QSDSSSRPPPIENLVVDGESQSI+GD
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGD

Query:  DLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKERRKKKA
        DLAARFAALKASLPSS TPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE   EDDD+EEF SSDED+DDR+KERRKKKA
Subjt:  DLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKERRKKKA

A0A6J1JTW4 glucosidase 2 subunit beta

1.5e-77

87.89

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Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGD
        +KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSA A   RNPR  QPH QSDSSSRPPPIENLVVDGESQSI+GD
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGD

Query:  DLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKERRKKKA
        DLAARFAALKASLPSS TPPPSSIPNDVDSDDEEDEVEKLIQWAKDA RLDPSPPSE      EDDD+EEF SSDED+DDR+KERRKKKA
Subjt:  DLAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKERRKKKA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24370.1 unknown protein

1.1e-21

43.43

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Query:  GNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGDDLAAR
        G ++++VEQLLQAAQD+++LKLSVDSH SR S +YLD DL  RF AL+S+            +  Q   Q       P  +++V +        +DL  R
Subjt:  GNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGDDLAAR

Query:  FAALKASLPSSNTPP----PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRR
        FAALK SLPS+++         I  D D   E+ EV+KLIQWA DAARLDPSP S  DD++ +   SD++ D  R
Subjt:  FAALKASLPSSNTPP----PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRR

Sequences

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CDS sequence

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ATGGATTCGAGAAAGAAGATGGGAAGAGGCAATGACGACGAGCAAGTCGAGCAATTGCTGCAAGCAGCTCAAGACGATCTCATGCTGAAATTGAGCGTCGATTCA
CACATGTCTCGTGTATCCCCAAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCGCGACCTTCCTCCGCCACCGCCGCCGTTCCCCGCAAT
CCTCGCCCTCCTCAGCCGCATATTCAATCCGATTCCTCGTCCCGACCGCCGCCGATTGAAAACCTTGTCGTCGATGGCGAGTCTCAATCGATTATCGGTGACGAT
CTCGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGAACACGCCGCCTCCGTCGTCGATACCTAATGATGTCGATAGCGACGACGAAGAGGATGAG
GTTGAGAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGACGATGACGAAGAGGAGTTCACTAGTTCCGATGAAGAC
GTCGACGATCGGAGAAAAGAGCGTCGGAAAAAGAAGGCCTGA

mRNA sequence

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Protein sequence

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MDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPPQPHIQSDSSSRPPPIENLVVDGESQSIIGDD
LAARFAALKASLPSSNTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA

CcUC01G008510 (gene) of Watermelon (PI 537277) v1 genome