CuGenDBv2

Gene ID	CcUC01G009780
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	ribonuclease H2 subunit C
Genome location	CicolChr01:11850035..11859271
RNA-Seq Expression	CcUC01G009780
Synteny	CcUC01G009780
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-66

69.15

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Query:  MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRP
        M++ENERK EVIVDFDFGSDS A+DLS KVHQLPCA+KFDGPCSVS YFKPKST           G+E+DGL+VE AYFRGRKL GATISLPEGYS    
Subjt:  MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNM
                            GYV+GRKS     ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDL +AS ALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNM

Query:  S
        S
Subjt:  S

XP_011660323.1 uncharacterized protein C12B10.15c [Cucumis sativus]

1.4e-67

69.35

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Query:  MNTENERKGEVIV--DFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVS
        MN +NERKGEVIV  DFDFG+D  ALD+S KVHQLPC IKFDGPC VSHYFKPKST           G+E+DGL +EEAYFRGRKL GATISLPEGYS  
Subjt:  MNTENERKGEVIV--DFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVS

Query:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNMS
                              GYVLG+KS ASE   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALHKPVTAEDL SASTALKN+S
Subjt:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNMS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

5.7e-66

68.66

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Query:  MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRP
        M++E ERK EVIVDFDFGSDS A+DLS KVHQLPCA+KFDGPCSVS YFKPKST           G+E+DGL+VE AYFRGRKL GATISLPEGYS    
Subjt:  MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNM
                            GYV+GRKS     ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDL +AS ALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNM

Query:  S
        S
Subjt:  S

XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]

3.3e-66

68.66

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Query:  MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRP
        M++E ERK EVIVDFDFGSDS A+DLS KVHQLPCA+KFDGPCSVS YFKPKST           G+E+DGL+V+ AYFRGRKL GATISLPEGY     
Subjt:  MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNM
                            GYV+GRKSL    ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDL  ASTALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNM

Query:  S
        S
Subjt:  S

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

3.8e-70

73.13

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Query:  MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRP
        MN ENERKGEVIVDFDF SDSVALDLS KVHQLPCAIKFDGPCSVS YFKPKST           G+E DGL+VEEAYFRGRKL GATISLPEGYS    
Subjt:  MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNM
                            GYVLG+KSL    ASE  Q+SSPWQVKAKF NITYWNHDTLPSQDD FQRSFHWLTVAQALHKPVTAEDL SASTALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNM

Query:  S
        S
Subjt:  S

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M1A2 Uncharacterized protein

6.6e-68

69.35

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Query:  MNTENERKGEVIV--DFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVS
        MN +NERKGEVIV  DFDFG+D  ALD+S KVHQLPC IKFDGPC VSHYFKPKST           G+E+DGL +EEAYFRGRKL GATISLPEGYS  
Subjt:  MNTENERKGEVIV--DFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVS

Query:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNMS
                              GYVLG+KS ASE   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALHKPVTAEDL SASTALKN+S
Subjt:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNMS

A0A1S3C9A8 uncharacterized protein C12B10.15c

4.4e-64

66.01

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Query:  MNTENERKGEVIV--DFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVS
        MN +N RKGE  V  DFDFGSD  ALDLS K+HQLPC IKFDGPC VSHYFKPKST           G+E+DGL VEEAYFRGRKL GATISLPEGYS  
Subjt:  MNTENERKGEVIV--DFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVS

Query:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALK
                              GYVLG+KSL    +S+   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALHKPVTAEDL SAS AL 
Subjt:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALK

Query:  NMS
        N+S
Subjt:  NMS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

4.4e-64

66.01

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Query:  MNTENERKGEVIV--DFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVS
        MN +N RKGE  V  DFDFGSD  ALDLS K+HQLPC IKFDGPC VSHYFKPKST           G+E+DGL VEEAYFRGRKL GATISLPEGYS  
Subjt:  MNTENERKGEVIV--DFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVS

Query:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALK
                              GYVLG+KSL    +S+   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALHKPVTAEDL SAS AL 
Subjt:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALK

Query:  NMS
        N+S
Subjt:  NMS

A0A6J1EN41 uncharacterized protein C12B10.15c

2.8e-66

68.66

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Query:  MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRP
        M++E ERK EVIVDFDFGSDS A+DLS KVHQLPCA+KFDGPCSVS YFKPKST           G+E+DGL+VE AYFRGRKL GATISLPEGYS    
Subjt:  MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNM
                            GYV+GRKS     ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDL +AS ALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNM

Query:  S
        S
Subjt:  S

A0A6J1KH29 uncharacterized protein C12B10.15c

1.6e-66

68.66

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Query:  MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRP
        M++E ERK EVIVDFDFGSDS A+DLS KVHQLPCA+KFDGPCSVS YFKPKST           G+E+DGL+V+ AYFRGRKL GATISLPEGY     
Subjt:  MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNM
                            GYV+GRKSL    ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDL  ASTALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNM

Query:  S
        S
Subjt:  S

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

3.8e-04

26.35

Show/hide

Query:  KVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDTGYVLGRKS
        K   LPC I +DGP  V  YF  K  +S             +  +      RGR+L G  + LPE Y+         G     +    N +T        
Subjt:  KVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDTGYVLGRKS

Query:  LASEHRQDSSPWQVKAKFENITYWNHDTL-PSQDDMFQRS-FHWLTVA
          SE     S W + + FE +  WN D +  S+ D ++R    W+  A
Subjt:  LASEHRQDSSPWQVKAKFENITYWNHDTL-PSQDDMFQRS-FHWLTVA

Q8TDP1 Ribonuclease H2 subunit C

4.5e-05

23.17

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Query:  VHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEG------------YSVSRPTSVGYGDCKSSNKQRLN
        +H LPC +  DGP  V  +F P        +    EG+E+         FRGR L G  +++P G             S+ +P  +         ++ L 
Subjt:  VHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEG------------YSVSRPTSVGYGDCKSSNKQRLN

Query:  TDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPV
         D    +G                  A F   T W  +T+P  D   + +  W ++A A+H  V
Subjt:  TDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

1.9e-43

52.17

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Query:  VDFDFGSDSVAL-DLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRPTSVGYGDCKSS
        +DF   +D  ++ DLSS+VHQLPC I+FDGP  VSHYFKPKS+            +EIDG+  EEA+FRGRKL GATISLP GYS       G+   ++S
Subjt:  VDFDFGSDSVAL-DLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRPTSVGYGDCKSS

Query:  NKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKN
        N   LN +       K  AS   +D+  W+VKAKF N+TYWNHD+LPS+DD F RSFHW ++A+ALHKPV  EDL + S   KN
Subjt:  NKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATACTGAAAACGAGAGGAAAGGGGAAGTAATCGTGGATTTTGATTTTGGAAGTGACTCTGTAGCTTTGGATCTCAGTAGTAAAGTCCATCAACTTCCCTGTGCAAT
TAAATTCGATGGTCCTTGCTCTGTTTCTCATTATTTTAAACCTAAATCCACGGTTTCCTTTTCATTTTTGTTCTTGCCTATGGAAGGAATGGAGATTGATGGTTTGACTG
TTGAGGAAGCTTATTTCAGAGGAAGAAAGTTACTGGGAGCAACCATTTCCCTTCCGGAGGGCTACTCTGTTTCAAGACCCACTTCAGTTGGCTATGGTGACTGTAAGAGT
TCAAATAAGCAGAGATTGAACACTGATACTGGCTATGTGCTAGGGAGGAAGAGTCTAGCTTCTGAACATCGTCAGGACTCGAGCCCTTGGCAGGTGAAGGCCAAATTTGA
AAACATTACATATTGGAACCATGACACCCTACCGTCACAGGACGATATGTTCCAACGCTCTTTTCACTGGCTGACTGTTGCACAAGCTTTGCACAAACCTGTAACAGCAG
AAGACTTGGAATCTGCATCTACTGCTCTCAAGAACATGAGTTGA

mRNA sequence

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AAAAGAAAACGAATTTCGAGCGGGAAAATCTTGGTCGACGATCCATTCTCATTTCTCAGTGCTCAAAAGAGCGGCAAGTGTAGAATCTGAAGTTGAAATGGTCGACTGAA
TTTCCTCGCCAGAAATCCGAAGCATCAACCTGGGTTTAGGGTTTTTGAGTTTGGGGTTGCTTCACAATTAATCAAATGAATACTGAAAACGAGAGGAAAGGGGAAGTAAT
CGTGGATTTTGATTTTGGAAGTGACTCTGTAGCTTTGGATCTCAGTAGTAAAGTCCATCAACTTCCCTGTGCAATTAAATTCGATGGTCCTTGCTCTGTTTCTCATTATT
TTAAACCTAAATCCACGGTTTCCTTTTCATTTTTGTTCTTGCCTATGGAAGGAATGGAGATTGATGGTTTGACTGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTACTG
GGAGCAACCATTTCCCTTCCGGAGGGCTACTCTGTTTCAAGACCCACTTCAGTTGGCTATGGTGACTGTAAGAGTTCAAATAAGCAGAGATTGAACACTGATACTGGCTA
TGTGCTAGGGAGGAAGAGTCTAGCTTCTGAACATCGTCAGGACTCGAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAACATTACATATTGGAACCATGACACCCTACCGT
CACAGGACGATATGTTCCAACGCTCTTTTCACTGGCTGACTGTTGCACAAGCTTTGCACAAACCTGTAACAGCAGAAGACTTGGAATCTGCATCTACTGCTCTCAAGAAC
ATGAGTTGATTACAATCATGTGCACTGAGAAGAAAACTTCTATTGCTAGAATGATTCCATACTACTTTGATTTGTTTTTGGTCACATTATTATCTATTTTACCAATTGAT
TCAATGGGTTTGGCATCTTAAATCATGATGTGGCTTTTTACAACAGTAATATAGAAGAATTTCATACAAGAGTAGTATTAGAAATATGATTTGCATTTTATTTTTAAAGT
TATTTAACTTCAAGAGTTGTTCGATAAAACTAACATTTGTAAAGTACAATA

Protein sequence

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MNTENERKGEVIVDFDFGSDSVALDLSSKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPMEGMEIDGLTVEEAYFRGRKLLGATISLPEGYSVSRPTSVGYGDCKS
SNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLESASTALKNMS

CcUC01G009780 (gene) of Watermelon (PI 537277) v1 genome