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CcUC01G010380 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G010380
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCicolChr01:14666326..14668720
RNA-Seq ExpressionCcUC01G010380
SyntenyCcUC01G010380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057186.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.4e-0552.63Show/hide
Query:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
        +K  G PN E TWE+V S+ +QFP+ HLEDKV      I R PII  Y+R+GK  IT
Subjt:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
KAA0065996.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.9e-0552.63Show/hide
Query:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
        +K  G P+ E TWE+V S+ +QFP+ HLEDKV     SI R PII  Y+R+GK  IT
Subjt:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
TYJ96663.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.1e-0552.83Show/hide
Query:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGK
        +K  G P+ E TWE+V S+ +QFP+ HLEDKV      I R PII  Y+RRGK
Subjt:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGK
TYK09688.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.4e-0550.88Show/hide
Query:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
        +K  G P+ E TWE+V S+ +QFP+ HLEDKV      I R PII  Y+R+GK  IT
Subjt:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
TYK23222.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]5.4e-0550.88Show/hide
Query:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
        +K  G P+ E TWE+V S+ +QFP+ HLEDKV      I R PII  Y+R+GK  IT
Subjt:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
TrEMBL top hitse value%identityAlignment
A0A5A7SIW4 Retrotransposable element Tf22.6e-0550.88Show/hide
Query:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
        +K  G P+ E TWE+V S+ +QFP+ HLEDKV      I R PII  Y+R+GK  IT
Subjt:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
A0A5A7USP1 Transposon Ty3-G Gag-Pol polyprotein1.2e-0552.63Show/hide
Query:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
        +K  G PN E TWE+V S+ +QFP+ HLEDKV      I R PII  Y+R+GK  IT
Subjt:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
A0A5D3BBH7 Ty3/gypsy retrotransposon protein2.0e-0552.83Show/hide
Query:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGK
        +K  G P+ E TWE+V S+ +QFP+ HLEDKV      I R PII  Y+RRGK
Subjt:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGK
A0A5D3CEP1 Retrotransposable element Tf22.6e-0550.88Show/hide
Query:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
        +K  G P+ E TWE+V S+ +QFP+ HLEDKV      I R PII  Y+R+GK  IT
Subjt:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
A0A5D3DYX4 Transposon Ty3-G Gag-Pol polyprotein9.0e-0652.63Show/hide
Query:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
        +K  G P+ E TWE+V S+ +QFP+ HLEDKV     SI R PII  Y+R+GK  IT
Subjt:  IKLIGFPNCETTWENVVSIKEQFPA-HLEDKVEANQGSIERQPIIKAYQRRGKVEIT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAACTCCGAATCGTTACACCCATTGGAAACATCTAGGTGTCATGCTGAGTATGTTGGAATAAAACTTATTGGTTTTCCAAACTGTGAGACGACATGGGAAAATGT
CGTTTCCATCAAGGAGCAATTTCCAGCCCACCTTGAGGACAAGGTGGAAGCAAACCAAGGAAGTATTGAAAGGCAACCAATCATAAAAGCTTACCAGAGGAGGGGCAAAG
TGGAAATCACATATGTAGATGTGCCAGGGACAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGAACTCCGAATCGTTACACCCATTGGAAACATCTAGGTGTCATGCTGAGTATGTTGGAATAAAACTTATTGGTTTTCCAAACTGTGAGACGACATGGGAAAATGT
CGTTTCCATCAAGGAGCAATTTCCAGCCCACCTTGAGGACAAGGTGGAAGCAAACCAAGGAAGTATTGAAAGGCAACCAATCATAAAAGCTTACCAGAGGAGGGGCAAAG
TGGAAATCACATATGTAGATGTGCCAGGGACAGTGTAA
Protein sequenceShow/hide protein sequence
MTNSESLHPLETSRCHAEYVGIKLIGFPNCETTWENVVSIKEQFPAHLEDKVEANQGSIERQPIIKAYQRRGKVEITYVDVPGTV