; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G011990 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G011990
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionATP synthase subunit b, chloroplastic
Genome locationCicolChr01:20992704..20993181
RNA-Seq ExpressionCcUC01G011990
SyntenyCcUC01G011990
Gene Ontology termsGO:0015986 - ATP synthesis coupled proton transport (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component)
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domainsIPR002146 - ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QDH07731.1 AtpF [Cucumis sativus]2.9e-4783.85Show/hide
Query:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG
        + + ++N+ + R     GGA+EQ EKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN    QVFQQALQGALG
Subjt:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG

Query:  TLNSCLDNELHLRTISANIGMFGTMKEITN
        TLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  TLNSCLDNELHLRTISANIGMFGTMKEITN
YP_009317372.1 ATP synthase CF0 B subunit [Coccinia grandis]2.9e-4783.85Show/hide
Query:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG
        + + ++N+ + R     GGA+EQ EKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN    QVFQQALQGALG
Subjt:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG

Query:  TLNSCLDNELHLRTISANIGMFGTMKEITN
        TLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  TLNSCLDNELHLRTISANIGMFGTMKEITN
YP_009325975.1 ATP synthase CF0 B subunit [Citrullus lanatus]2.9e-4783.85Show/hide
Query:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG
        + + ++N+ + R     GGA+EQ EKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN    QVFQQALQGALG
Subjt:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG

Query:  TLNSCLDNELHLRTISANIGMFGTMKEITN
        TLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  TLNSCLDNELHLRTISANIGMFGTMKEITN
YP_009752821.1 CF0 subunit I [Baijiania yunnanensis]6.5e-4783.08Show/hide
Query:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG
        + + ++N+ + R     GGA+EQ EKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQ+AIN    QVFQQALQGALG
Subjt:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG

Query:  TLNSCLDNELHLRTISANIGMFGTMKEITN
        TLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  TLNSCLDNELHLRTISANIGMFGTMKEITN
YP_009753075.1 CF0 subunit I [Corallocarpus boehmii]8.4e-4783.08Show/hide
Query:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG
        + + ++N+ + R     GGA+EQ EKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLEN+KNETIRFEQQKAIN    QVFQQALQGALG
Subjt:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG

Query:  TLNSCLDNELHLRTISANIGMFGTMKEITN
        TLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  TLNSCLDNELHLRTISANIGMFGTMKEITN
TrEMBL top hitse value%identityAlignment
A0A1P8LDX5 ATP synthase CF0 B subunit1.4e-4783.85Show/hide
Query:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG
        + + ++N+ + R     GGA+EQ EKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN    QVFQQALQGALG
Subjt:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG

Query:  TLNSCLDNELHLRTISANIGMFGTMKEITN
        TLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  TLNSCLDNELHLRTISANIGMFGTMKEITN
A0A1X9Q1S9 ATP synthase subunit b, chloroplastic1.4e-4783.85Show/hide
Query:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG
        + + ++N+ + R     GGA+EQ EKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN    QVFQQALQGALG
Subjt:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG

Query:  TLNSCLDNELHLRTISANIGMFGTMKEITN
        TLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  TLNSCLDNELHLRTISANIGMFGTMKEITN
A0A218KG26 ATP synthase subunit b, chloroplastic1.4e-4783.85Show/hide
Query:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG
        + + ++N+ + R     GGA+EQ EKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN    QVFQQALQGALG
Subjt:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG

Query:  TLNSCLDNELHLRTISANIGMFGTMKEITN
        TLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  TLNSCLDNELHLRTISANIGMFGTMKEITN
A0A2Z2CGC9 ATP synthase subunit b, chloroplastic1.4e-4783.85Show/hide
Query:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG
        + + ++N+ + R     GGA+EQ EKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN    QVFQQALQGALG
Subjt:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG

Query:  TLNSCLDNELHLRTISANIGMFGTMKEITN
        TLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  TLNSCLDNELHLRTISANIGMFGTMKEITN
X2F1Z3 ATP synthase subunit b, chloroplastic1.4e-4783.85Show/hide
Query:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG
        + + ++N+ + R     GGA+EQ EKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN    QVFQQALQGALG
Subjt:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG

Query:  TLNSCLDNELHLRTISANIGMFGTMKEITN
        TLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  TLNSCLDNELHLRTISANIGMFGTMKEITN
SwissProt top hitse value%identityAlignment
A4GYP4 ATP synthase subunit b, chloroplastic3.3e-4688.5Show/hide
Query:  GGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAINQ----VFQQALQGALGTLNSCLDNELHLRTISA
        GGA+EQ EKARARLRKVE+EADQFRVNGYSEIEREKLNLINST K+LEQLENYKNETI FEQQ+AINQ    VFQQALQGALGTLNSCL NELHLRTISA
Subjt:  GGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAINQ----VFQQALQGALGTLNSCLDNELHLRTISA

Query:  NIGMFGTMKEITN
        NIGMFG MKEITN
Subjt:  NIGMFGTMKEITN
Q09G60 ATP synthase subunit b, chloroplastic2.8e-4586.73Show/hide
Query:  GGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAINQ----VFQQALQGALGTLNSCLDNELHLRTISA
        GGA+EQ EKARARLRKVEMEAD+FRVNGYSEIEREKLNLINST K+LE+LENYKNETI+FEQQ+AINQ    VFQQALQ ALGTLNSCL+NELHLRTISA
Subjt:  GGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAINQ----VFQQALQGALGTLNSCLDNELHLRTISA

Query:  NIGMFGTMKEITN
        NIGMFGTMKEIT+
Subjt:  NIGMFGTMKEITN
Q14FH1 ATP synthase subunit b, chloroplastic3.3e-4688.5Show/hide
Query:  GGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAINQ----VFQQALQGALGTLNSCLDNELHLRTISA
        GGA+EQ EKARARLRKVE+EADQFRVNGYSEIEREKLNLINST K+LEQLENYKNETI FEQQ+AINQ    VFQQALQGALGTLNSCL NELHLRTISA
Subjt:  GGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAINQ----VFQQALQGALGTLNSCLDNELHLRTISA

Query:  NIGMFGTMKEITN
        NIGMFG MKEITN
Subjt:  NIGMFGTMKEITN
Q49L12 ATP synthase subunit b, chloroplastic2.2e-4586.73Show/hide
Query:  GGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAINQ----VFQQALQGALGTLNSCLDNELHLRTISA
        GGA+EQ EKARARLRKVEMEA+QFRVNGYSEIE+EKLNLINST K+LEQLENYKNETI FEQQ+AINQ    VFQQALQGALGTLNSCL+NELHLRTISA
Subjt:  GGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAINQ----VFQQALQGALGTLNSCLDNELHLRTISA

Query:  NIGMFGTMKEITN
        NIGMFG MKEIT+
Subjt:  NIGMFGTMKEITN
Q4VZP7 ATP synthase subunit b, chloroplastic3.8e-5083.85Show/hide
Query:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG
        + + ++N+ + R     GGA+EQ EKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN    QVFQQALQGALG
Subjt:  MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAIN----QVFQQALQGALG

Query:  TLNSCLDNELHLRTISANIGMFGTMKEITN
        TLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  TLNSCLDNELHLRTISANIGMFGTMKEITN
Arabidopsis top hitse value%identityAlignment
ATCG00130.1 ATPase, F0 complex, subunit B/B', bacterial/chloroplast7.9e-4381.25Show/hide
Query:  GALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAINQ----VFQQALQGALGTLNSCLDNELHLRTISAN
        GA++Q E ARARLR VE EAD+FRVNGYSEIEREKLNLINST K+L+QLENYKNETI FEQQ+ INQ    VFQQALQGA+GTLNSCL NELHLRTI+AN
Subjt:  GALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAINQ----VFQQALQGALGTLNSCLDNELHLRTISAN

Query:  IGMFGTMKEITN
        IGMFGTMKEIT+
Subjt:  IGMFGTMKEITN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAGGATCTTGAAAACAATTCAAAATTCAGAAGAACTCCGGGGGGGGGGGGGGCCCTTGAACAGCGGGAAAAAGCCCGGGCCCGCTTACGAAAAGTCGAAATGGA
AGCGGATCAGTTTCGAGTGAATGGATACTCTGAGATAGAACGAGAAAAATTGAATTTGATTAATTCAACTTCTAAAAGTTTGGAACAATTAGAAAATTATAAAAATGAAA
CTATTCGTTTTGAACAACAAAAAGCCATTAATCAAGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTTAATAGTTGTTTGGACAACGAGTTACATTTACGTACC
ATCAGTGCTAATATTGGCATGTTTGGGACGATGAAAGAAATAACTAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAGGATCTTGAAAACAATTCAAAATTCAGAAGAACTCCGGGGGGGGGGGGGGCCCTTGAACAGCGGGAAAAAGCCCGGGCCCGCTTACGAAAAGTCGAAATGGA
AGCGGATCAGTTTCGAGTGAATGGATACTCTGAGATAGAACGAGAAAAATTGAATTTGATTAATTCAACTTCTAAAAGTTTGGAACAATTAGAAAATTATAAAAATGAAA
CTATTCGTTTTGAACAACAAAAAGCCATTAATCAAGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTTAATAGTTGTTTGGACAACGAGTTACATTTACGTACC
ATCAGTGCTAATATTGGCATGTTTGGGACGATGAAAGAAATAACTAACTGA
Protein sequenceShow/hide protein sequence
MFEDLENNSKFRRTPGGGGALEQREKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAINQVFQQALQGALGTLNSCLDNELHLRT
ISANIGMFGTMKEITN