CuGenDBv2

Gene ID	CcUC01G012000
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Cytochrome f
Genome location	CicolChr01:20993224..21006358
RNA-Seq Expression	CcUC01G012000
Synteny	CcUC01G012000
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0022900 - electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0031361 - integral component of thylakoid membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR002325 - Cytochrome f IPR024094 - Cytochrome f large domain IPR036826 - Cytochrome f large domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ATL59178.1 cytochrome f [Posoqueria latifolia]

2.1e-27

89.74

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPEIKEK IG+L  + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

ATL60204.1 cytochrome f [Deppea grandiflora]

2.1e-27

89.74

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPEIKEK IG+L  + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

ATL62858.1 cytochrome f [Steenisia pleurocarpa]

2.1e-27

89.74

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPEIKEK IG+L  + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

YP_001671696.1 cytochrome f [Carica papaya]

2.1e-27

83.33

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRYMGISQK
        PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPE+KEK IG+L  + Y    +K
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRYMGISQK

YP_009752848.1 cytochrome f [Baijiania yunnanensis]

2.1e-27

89.74

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPEIKEK IG+L  + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

TrEMBL top hits

e value

%identity

Alignment

A0A4D6WIS7 Cytochrome f

1.0e-27

88.46

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPE+KEK IG+L+ + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

A0A515BLI8 Cytochrome f

1.0e-27

89.74

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPEIKEK IG+L  + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

A0A7D7JGN0 Cytochrome f

1.0e-27

88.46

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPE+KEK IG+L+ + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

A0A803N815 Uncharacterized protein

4.2e-29

88.46

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFE VVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELAPPPDRISPE+KEK IG+L  + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

A0A803N8S8 Uncharacterized protein

3.5e-28

88.61

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELA-PPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPPDRISPE+KEK IG+L  + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELA-PPPDRISPEIKEKRIGSLHSKRY

SwissProt top hits

e value

%identity

Alignment

A1EA21 Cytochrome f

1.1e-29

87.18

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFEAV+RIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPE+KEK IG+L  + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

A8SEB6 Cytochrome f

6.2e-30

88.46

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPE+KEK IG+L  + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

A8Y999 Cytochrome f

1.1e-29

87.18

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFEAV+RIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPE+KEK IG+L  + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

B1A948 Cytochrome f

2.8e-30

83.33

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRYMGISQK
        PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPE+KEK IG+L  + Y    +K
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRYMGISQK

Q2QD76 Cytochrome f

6.2e-30

88.46

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANG+KGGLNVGAVLILPEGFELA PPDRISPEIKEK +G+L  + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

Arabidopsis top hits

e value

%identity

Alignment

ATCG00540.1 photosynthetic electron transfer A

1.1e-29

84.62

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Query:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY
        PVDIEVPQ VLPDTVFEAVV+IPYDMQLKQVLANG+KG LNVGAVLILPEGFELA PPDRISPE+KEK IG+L  + Y
Subjt:  PVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRY

Sequences

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CDS sequence

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ATGATTTGTACTCGCATATTAGTTGATACAATTCTTGAGAATTATCTCCTAAACCATTTTTACCCCGTGGATATTGAGGTTCCACAAGCGGTACTTCCTGATACTGTATT
TGAAGCAGTTGTTCGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCGAATGGTAGAAAGGGCGGTTTGAATGTGGGGGCTGTTCTTATTTTACCCGAAGGGTTTG
AATTAGCCCCCCCCCCCGATCGTATTTCTCCCGAGATTAAAGAAAAGAGGATAGGCTCATTACATTCAAAAAGATATATGGGAATTTCCCAGAAATAA

mRNA sequence

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Protein sequence

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MICTRILVDTILENYLLNHFYPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGRKGGLNVGAVLILPEGFELAPPPDRISPEIKEKRIGSLHSKRYMGISQK

CcUC01G012000 (gene) of Watermelon (PI 537277) v1 genome