; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G012260 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G012260
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLOW QUALITY PROTEIN: nuclear speckle splicing regulatory protein 1
Genome locationCicolChr01:22158039..22158302
RNA-Seq ExpressionCcUC01G012260
SyntenyCcUC01G012260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2028179.1 hypothetical protein ES319_D05G081300v1 [Gossypium barbadense]5.0e-0643.04Show/hide
Query:  NLEPTSQDLSLAISNSTIEDVTT----------VAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKN
        N   +S   S  +S+   +D TT          ++MVL+GC RCLMYVMLS++D KCPKC  T LLD+F+ +N     N
Subjt:  NLEPTSQDLSLAISNSTIEDVTT----------VAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKN

KAF8088860.1 hypothetical protein N665_0528s0018 [Sinapis alba]8.5e-0653.45Show/hide
Query:  TSQDLSLAISNSTIED--VTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFN
        T+   S  +S+ T ++   TT++MVL+GC RCLMYVMLS+ D KCPKC  T LLD F+
Subjt:  TSQDLSLAISNSTIED--VTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFN

KAG6583700.1 hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sororia]2.2e-1775.76Show/hide
Query:  SNSTIEDVTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKNVVDMLPDVAK
        S+S  ED TT  MVLLGCT+CLMYVM SK DLKCPKCN TTLLDV NL NQAS+KN+VDM  DVAK
Subjt:  SNSTIEDVTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKNVVDMLPDVAK

MBA0745133.1 hypothetical protein [Gossypium gossypioides]8.5e-0643.04Show/hide
Query:  NLEPTSQDLSLAISNSTIEDVTT----------VAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKN
        N   +S   S  +S+   +D TT          ++MVL+GC RCLMYVMLS++D KCPKC  T LLD+F+  N     N
Subjt:  NLEPTSQDLSLAISNSTIEDVTT----------VAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKN

XP_039002217.1 uncharacterized protein LOC120128632 [Hibiscus syriacus]8.5e-0654.72Show/hide
Query:  DLSLAISNSTIEDVTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFN
        D++ A+  ++  D T+  MVL+GC RCL+YVMLS+ D KCPKCN T LLD  N
Subjt:  DLSLAISNSTIEDVTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFN

TrEMBL top hitse value%identityAlignment
A0A5D2CHE2 Uncharacterized protein2.4e-0643.04Show/hide
Query:  NLEPTSQDLSLAISNSTIEDVTT----------VAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKN
        N   +S   S  +S+   +D TT          ++MVL+GC RCLMYVMLS++D KCPKC  T LLD+F+ +N     N
Subjt:  NLEPTSQDLSLAISNSTIEDVTT----------VAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKN

A0A5D2KTB2 Uncharacterized protein2.4e-0643.04Show/hide
Query:  NLEPTSQDLSLAISNSTIEDVTT----------VAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKN
        N   +S   S  +S+   +D TT          ++MVL+GC RCLMYVMLS++D KCPKC  T LLD+F+ +N     N
Subjt:  NLEPTSQDLSLAISNSTIEDVTT----------VAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKN

A0A5D2UUA0 Uncharacterized protein2.4e-0643.04Show/hide
Query:  NLEPTSQDLSLAISNSTIEDVTT----------VAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKN
        N   +S   S  +S+   +D TT          ++MVL+GC RCLMYVMLS++D KCPKC  T LLD+F+ +N     N
Subjt:  NLEPTSQDLSLAISNSTIEDVTT----------VAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKN

A0A5J5REV4 Uncharacterized protein2.4e-0643.04Show/hide
Query:  NLEPTSQDLSLAISNSTIEDVTT----------VAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKN
        N   +S   S  +S+   +D TT          ++MVL+GC RCLMYVMLS++D KCPKC  T LLD+F+ +N     N
Subjt:  NLEPTSQDLSLAISNSTIEDVTT----------VAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKN

A0A6A3AD94 Uncharacterized protein4.1e-0654.72Show/hide
Query:  DLSLAISNSTIEDVTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFN
        D++ A+  ++  D T+  MVL+GC RCL+YVMLS+ D KCPKCN T LLD  N
Subjt:  DLSLAISNSTIEDVTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFN

SwissProt top hitse value%identityAlignment
Q9FNI1 Protein GL2-INTERACTING REPRESSOR 11.0e-0671.43Show/hide
Query:  TVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLD
        T +MVL+GC RCLMYVMLS+ D KCPKC  T LLD
Subjt:  TVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLD

Q9SRN4 Protein GL2-INTERACTING REPRESSOR 21.4e-0652.83Show/hide
Query:  TSQDLSLAISNSTIEDVTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLD
        TS    ++   +  E+ T  +MVL+GC RCLMYVMLS  D KCPKC  T LLD
Subjt:  TSQDLSLAISNSTIEDVTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLD

Arabidopsis top hitse value%identityAlignment
AT3G11600.1 unknown protein9.7e-0852.83Show/hide
Query:  TSQDLSLAISNSTIEDVTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLD
        TS    ++   +  E+ T  +MVL+GC RCLMYVMLS  D KCPKC  T LLD
Subjt:  TSQDLSLAISNSTIEDVTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLD

AT5G06270.1 unknown protein7.4e-0871.43Show/hide
Query:  TVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLD
        T +MVL+GC RCLMYVMLS+ D KCPKC  T LLD
Subjt:  TVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCAAAGCTTCAACAATCTAAATTTAGAACCGACATCGCAAGATCTGTCGTTAGCTATATCTAACTCGACAATTGAAGATGTCACGACGGTGGCCATGGTG
CTACTAGGATGCACTCGATGCCTCATGTACGTCATGTTGTCTAAGTTAGATCTCAAGTGTCCTAAATGTAACGGCACTACATTGCTTGATGTATTCAATTTGGTC
AATCAAGCATCTCAAAAAAATGTTGTCGACATGCTGCCCGATGTTGCTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCAAAGCTTCAACAATCTAAATTTAGAACCGACATCGCAAGATCTGTCGTTAGCTATATCTAACTCGACAATTGAAGATGTCACGACGGTGGCCATGGTG
CTACTAGGATGCACTCGATGCCTCATGTACGTCATGTTGTCTAAGTTAGATCTCAAGTGTCCTAAATGTAACGGCACTACATTGCTTGATGTATTCAATTTGGTC
AATCAAGCATCTCAAAAAAATGTTGTCGACATGCTGCCCGATGTTGCTAAATGA
Protein sequenceShow/hide protein sequence
MGQSFNNLNLEPTSQDLSLAISNSTIEDVTTVAMVLLGCTRCLMYVMLSKLDLKCPKCNGTTLLDVFNLVNQASQKNVVDMLPDVAK