CuGenDBv2

Gene ID	CcUC01G012580
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Cytochrome f
Genome location	CicolChr01:24023139..24023730
RNA-Seq Expression	CcUC01G012580
Synteny	CcUC01G012580
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0022900 - electron transport chain (biological process) GO:0009507 - chloroplast (cellular component) GO:0031361 - integral component of thylakoid membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR002325 - Cytochrome f IPR024094 - Cytochrome f large domain IPR036150 - Cytochrome b/b6, C-terminal domain superfamily IPR036826 - Cytochrome f large domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

YP_004841796.1 cytochrome f [Cucumis melo subsp. melo]

2.3e-30

73.47

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNNNVYNAT                      AANGRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

YP_009317399.1 cytochrome f [Coccinia grandis]

2.3e-30

73.47

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATTA---------------------ANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNNNVYNAT A                     ANGRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATTA---------------------ANGRQVVDIIPPG

YP_009326002.1 cytochrome f [Citrullus lanatus]

6.0e-31

74.49

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNNNVYNATT                     AANGRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

YP_009752003.1 cytochrome f [Cionosicys macranthus]

2.3e-30

73.47

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNNNVYNAT                      AANGRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

YP_247612.1 cytochrome f [Cucumis sativus]

2.3e-30

73.47

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNNNVYNAT                      AANGRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT89 Cytochrome f

1.7e-31

74.49

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRN+GRGQIYPDGSKSNNNVYNAT                      AANGRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

A0A1P8LE85 Cytochrome f

2.9e-31

74.49

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNNNVYNATT                     AANGRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

A0A1P8LEF8 Cytochrome f

2.9e-31

74.49

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNNNVYNATT                     AANGRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

A0A249RXC8 Cytochrome f

2.9e-31

74.49

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNNNVYNATT                     AANGRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

A0A343A8C3 Cytochrome f

2.9e-31

74.49

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNNNVYNATT                     AANGRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

SwissProt top hits

e value

%identity

Alignment

P06449 Cytochrome f

1.3e-31

70.41

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNN VYNAT                      A++GRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

Q09X04 Cytochrome f

2.0e-32

71.43

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNNNVYNAT+                     A++GRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

Q2QD76 Cytochrome f

3.0e-33

73.47

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNNNVYNAT                      AANGRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

Q3C1I8 Cytochrome f

1.3e-31

70.41

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNN VYNAT                      A++GRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

Q68RZ3 Cytochrome f

1.3e-31

70.41

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVG N+GRGQIYPDGSKSNN VYNAT                      A++GRQVVDIIPPG
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00540.1 photosynthetic electron transfer A

6.4e-31

66.33

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Query:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG
        L +GPVPGQKYSEITFPIL+PDPAT KDVHFLKYPIYVG N+GRGQIYPDGSKSNN VYNAT                      A+NGR+V+DIIP G
Subjt:  LTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDGSKSNNNVYNATT---------------------AANGRQVVDIIPPG

ATCG00730.1 photosynthetic electron transfer D

1.7e-23

89.66

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Query:  MISVPAGLLTVPFLENVNKFQNPFRCPVATTVFFISTAVALWLGNGATLPIDKSLTLG
        M+SVPAGLLTVPFLENVNKFQNPFR PVATTVF I TA ALWLG GATLPIDKSLTLG
Subjt:  MISVPAGLLTVPFLENVNKFQNPFRCPVATTVFFISTAVALWLGNGATLPIDKSLTLG

Sequences

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CDS sequence

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ATGATTTCTGTACCGGCAGGATTATTAACTGTACCGTTTTTGGAGAATGTTAATAAATTCCAAAATCCATTTCGTTGTCCAGTAGCGACAACCGTCTTTTTTATT
AGTACCGCAGTAGCCCTTTGGTTGGGTAATGGAGCAACATTACCGATTGATAAATCCCTAACTTTAGGTCCTGTTCCTGGTCAGAAATATAGTGAAATCACCTTT
CCTATTCTTTCCCCGGACCCTGCGACTAAGAAAGATGTTCACTTCTTAAAATATCCCATATACGTAGGCAGGAACAAGGGAAGGGGTCAGATTTATCCCGACGGG
AGTAAGAGTAATAATAATGTTTATAATGCTACAACTGCAGCGAATGGGCGTCAAGTGGTTGATATTATCCCTCCAGGAGGAAAGGAGGGAAAGCGAGGAAGAAAC
AGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGAC

mRNA sequence

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TGCCAAATAAGTTATTAGGTGTTCTTTTAATGATTTCTGTACCGGCAGGATTATTAACTGTACCGTTTTTGGAGAATGTTAATAAATTCCAAAATCCATTTCGTT
GTCCAGTAGCGACAACCGTCTTTTTTATTAGTACCGCAGTAGCCCTTTGGTTGGGTAATGGAGCAACATTACCGATTGATAAATCCCTAACTTTAGGTCCTGTTC
CTGGTCAGAAATATAGTGAAATCACCTTTCCTATTCTTTCCCCGGACCCTGCGACTAAGAAAGATGTTCACTTCTTAAAATATCCCATATACGTAGGCAGGAACA
AGGGAAGGGGTCAGATTTATCCCGACGGGAGTAAGAGTAATAATAATGTTTATAATGCTACAACTGCAGCGAATGGGCGTCAAGTGGTTGATATTATCCCTCCAG
GAGGAAAGGAGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGAC

Protein sequence

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MISVPAGLLTVPFLENVNKFQNPFRCPVATTVFFISTAVALWLGNGATLPIDKSLTLGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGRNKGRGQIYPDG
SKSNNNVYNATTAANGRQVVDIIPPGGKEGKRGRNRCRNRNHFRNEGD

CcUC01G012580 (gene) of Watermelon (PI 537277) v1 genome