; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G012880 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G012880
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTranscription factor PAR1-like
Genome locationCicolChr01:24887989..24888240
RNA-Seq ExpressionCcUC01G012880
SyntenyCcUC01G012880
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055213.1 transcription factor PAR1-like [Cucumis melo var. makuwa]4.0e-2988.75Show/hide
Query:  MALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQ
        MALADLMANSS  CHHNVA SS KRKRREAREVRRKVQKLRWVVPGGRGLR+EHLFA+TA+YILHL+LKVCALE+VLKLQ
Subjt:  MALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQ

KAE8124179.1 hypothetical protein FH972_019086 [Carpinus fangiana]5.6e-0748.75Show/hide
Query:  ALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQE
        A  DL   S       V      R +R  R V+ KVQKL+ +VPGG GL+ ++LFA+TA+YILHLRL+V ALE+VL+L +
Subjt:  ALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQE

KAG6573044.1 Ubiquitin-conjugating enzyme E2 5, partial [Cucurbita argyrosperma subsp. sororia]1.5e-1567.09Show/hide
Query:  MALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKL
        MA  DL+ NS+SS + NVA S LKRKRREARE+RRKVQKLRWVV GGR LR+EHLFAKTA YIL+L   +     VL L
Subjt:  MALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKL

KAG6584233.1 hypothetical protein SDJN03_20165, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2487.5Show/hide
Query:  SSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQEEA
        SSCH NV A  LKRKRREAR+VRRKVQKLRWVVPGGRGL+QEHLFAKTAHYILHLRLKVCAL+T+LKLQ+EA
Subjt:  SSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQEEA

KAG7019830.1 hypothetical protein SDJN02_18794, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-2487.5Show/hide
Query:  SSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQEEA
        SSCH NV A  LKRKRREAR+VRRKVQKLRWVVPGGRGL+QEHLFAKTAHYILHLRLKVCAL+T+LKLQ+EA
Subjt:  SSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQEEA

TrEMBL top hitse value%identityAlignment
A0A0A0LQU9 UBC core domain-containing protein1.7e-0995.12Show/hide
Query:  MALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLR
        MALADLMANSSSSCHH+V ASSLKRKRREAREVRRKVQKLR
Subjt:  MALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLR

A0A438EHL0 BHLH domain-containing protein1.8e-0654.24Show/hide
Query:  SSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKL
        S  K +RR  R VRRKV+KL+ ++PGGRGL+ + LF +TA YILHLRL+V  L+ + K+
Subjt:  SSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKL

A0A438JND2 BHLH domain-containing protein1.8e-0654.24Show/hide
Query:  SSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKL
        S  K +RR  R VRRKV+KL+ ++PGGRGL+ + LF +TA YILHLRL+V  L+ + K+
Subjt:  SSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKL

A0A5A7UGX9 Transcription factor PAR1-like1.9e-2988.75Show/hide
Query:  MALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQ
        MALADLMANSS  CHHNVA SS KRKRREAREVRRKVQKLRWVVPGGRGLR+EHLFA+TA+YILHL+LKVCALE+VLKLQ
Subjt:  MALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQ

A0A5N6RR97 Uncharacterized protein2.7e-0748.75Show/hide
Query:  ALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQE
        A  DL   S       V      R +R  R V+ KVQKL+ +VPGG GL+ ++LFA+TA+YILHLRL+V ALE+VL+L +
Subjt:  ALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTAGCAGATTTGATGGCTAATTCCAGCTCCTCTTGCCATCATAATGTGGCTGCGTCAAGCTTGAAGAGGAAGAGGAGAGAAGCACGAGAGGTTCGCCGGAAAGT
TCAGAAGCTTCGGTGGGTGGTGCCCGGTGGTCGAGGGTTGCGACAGGAACATCTCTTCGCCAAAACAGCTCATTATATATTGCATTTGAGATTGAAAGTTTGTGCTCTTG
AAACTGTTCTCAAATTGCAGGAAGAGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTAGCAGATTTGATGGCTAATTCCAGCTCCTCTTGCCATCATAATGTGGCTGCGTCAAGCTTGAAGAGGAAGAGGAGAGAAGCACGAGAGGTTCGCCGGAAAGT
TCAGAAGCTTCGGTGGGTGGTGCCCGGTGGTCGAGGGTTGCGACAGGAACATCTCTTCGCCAAAACAGCTCATTATATATTGCATTTGAGATTGAAAGTTTGTGCTCTTG
AAACTGTTCTCAAATTGCAGGAAGAGGCTTGA
Protein sequenceShow/hide protein sequence
MALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQEEA