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CcUC01G012960 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G012960
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRING-H2 finger protein ATL56-like
Genome locationCicolChr01:24936475..24936876
RNA-Seq ExpressionCcUC01G012960
SyntenyCcUC01G012960
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8124192.1 hypothetical protein FH972_019098 [Carpinus fangiana]1.6e-3258.78Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKTRD---LEMECVVCLENFKNGERCRLLPNCNHSF
        ME+VVS VLL VGI VLV+IH+CI GRA RG    I  +N     + G KR S  DLE+LPC++YK  +     ++C VCL+NFK G++CRLLPNC HSF
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKTRD---LEMECVVCLENFKNGERCRLLPNCNHSF

Query:  HVQCIDSWLLNRPICPICRTFAAALPKISLI
        HVQCIDSWLL  PICPICRT     PKI +I
Subjt:  HVQCIDSWLLNRPICPICRTFAAALPKISLI

KCW49298.1 hypothetical protein EUGRSUZ_K02856 [Eucalyptus grandis]9.6e-3364.23Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEY----KTRDLEMECVVCLENFKNGERCRLLPNCN
        MVMEI++S VLL +GIAVLVVIHVCIVGRA R EG G  R     NSN    + S EDL+KLPC+EY    K  D + +C VCLENFK GE+CRLLPNC 
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEY----KTRDLEMECVVCLENFKNGERCRLLPNCN

Query:  HSFHVQCIDSWLLNRPICPICRT
        H FH QCIDSWLL   ICP+CRT
Subjt:  HSFHVQCIDSWLLNRPICPICRT

XP_018720505.1 RING-H2 finger protein ATL74 [Eucalyptus grandis]9.6e-3364.23Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEY----KTRDLEMECVVCLENFKNGERCRLLPNCN
        MVMEI++S VLL +GIAVLVVIHVCIVGRA R EG G  R     NSN    + S EDL+KLPC+EY    K  D + +C VCLENFK GE+CRLLPNC 
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEY----KTRDLEMECVVCLENFKNGERCRLLPNCN

Query:  HSFHVQCIDSWLLNRPICPICRT
        H FH QCIDSWLL   ICP+CRT
Subjt:  HSFHVQCIDSWLLNRPICPICRT

XP_022954431.1 RING-H2 finger protein ATL56-like [Cucurbita moschata]1.5e-4170.59Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYK------TRDLEMECVVCLENFKNGERCRLLPN
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RGE EGIWRSN         K  S +DLEKLPCYEYK      T  +++ECVVCLE FK GERCRLLPN
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYK------TRDLEMECVVCLENFKNGERCRLLPN

Query:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI
        C HSFHV+CIDSWLL  PICPICRT  A +PK  L+
Subjt:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI

XP_022994122.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]5.1e-4271.32Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYK------TRDLEMECVVCLENFKNGERCRLLPN
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RGE EGIWRSN         K  S +DLEKLPCYEYK      T  +++ECVVCLE FK GERCRLLPN
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYK------TRDLEMECVVCLENFKNGERCRLLPN

Query:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI
        C HSFHV+CIDSWLL  PICPICRT  AA+PK  L+
Subjt:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI

TrEMBL top hitse value%identityAlignment
A0A059A647 RING-type domain-containing protein4.6e-3364.23Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEY----KTRDLEMECVVCLENFKNGERCRLLPNCN
        MVMEI++S VLL +GIAVLVVIHVCIVGRA R EG G  R     NSN    + S EDL+KLPC+EY    K  D + +C VCLENFK GE+CRLLPNC 
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEY----KTRDLEMECVVCLENFKNGERCRLLPNCN

Query:  HSFHVQCIDSWLLNRPICPICRT
        H FH QCIDSWLL   ICP+CRT
Subjt:  HSFHVQCIDSWLLNRPICPICRT

A0A2P5F6F5 43kDa postsynaptic protein6.7e-3257.46Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLE----MECVVCLENFKNGERCRLLPNCN
        MVMEIV+S +LL VGIAVLVVIHVCIVGRA R   +G+    + G++  G K  S EDL+ +PC++Y   D +    ++C VCLENFK G++CRLLP+C 
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLE----MECVVCLENFKNGERCRLLPNCN

Query:  HSFHVQCIDSWLLNRPICPICRTFAAALPKISLI
        HSFH QCIDSWLL  PICPICRT +A +PK  ++
Subjt:  HSFHVQCIDSWLLNRPICPICRTFAAALPKISLI

A0A5N6RPJ5 RING-type domain-containing protein7.9e-3358.78Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKTRD---LEMECVVCLENFKNGERCRLLPNCNHSF
        ME+VVS VLL VGI VLV+IH+CI GRA RG    I  +N     + G KR S  DLE+LPC++YK  +     ++C VCL+NFK G++CRLLPNC HSF
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKTRD---LEMECVVCLENFKNGERCRLLPNCNHSF

Query:  HVQCIDSWLLNRPICPICRTFAAALPKISLI
        HVQCIDSWLL  PICPICRT     PKI +I
Subjt:  HVQCIDSWLLNRPICPICRTFAAALPKISLI

A0A6J1GQW8 RING-H2 finger protein ATL56-like7.1e-4270.59Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYK------TRDLEMECVVCLENFKNGERCRLLPN
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RGE EGIWRSN         K  S +DLEKLPCYEYK      T  +++ECVVCLE FK GERCRLLPN
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYK------TRDLEMECVVCLENFKNGERCRLLPN

Query:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI
        C HSFHV+CIDSWLL  PICPICRT  A +PK  L+
Subjt:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI

A0A6J1JUU5 RING-H2 finger protein ATL56-like2.5e-4271.32Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYK------TRDLEMECVVCLENFKNGERCRLLPN
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RGE EGIWRSN         K  S +DLEKLPCYEYK      T  +++ECVVCLE FK GERCRLLPN
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYK------TRDLEMECVVCLENFKNGERCRLLPN

Query:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI
        C HSFHV+CIDSWLL  PICPICRT  AA+PK  L+
Subjt:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI

SwissProt top hitse value%identityAlignment
Q6NML0 E3 ubiquitin-protein ligase ATL768.7e-1344.58Show/hide
Query:  SNSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEM-----ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR
        S    +SN G+K   K+ L   P   Y +R++ +     ECV+CL +F +GE+ RLLP CNH FHV+CID WL +   CP CR
Subjt:  SNSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEM-----ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR

Q9FLC6 RING-H2 finger protein ATL733.3e-1245Show/hide
Query:  NSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR
        ++N N   G+K   K  L+ +P   Y + +L+M   EC++CL +F  GE  R+LP CNH FHV+CID+WLL+   CP CR
Subjt:  NSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR

Q9LF64 RING-H2 finger protein ATL521.9e-1236.08Show/hide
Query:  LRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAAL
        L   GEG + S    ++N      ++  ++ +  Y+YK+ D  +   +C VCL  F+  E  RLLP CNH+FH+ CID+WL +   CP+CR F   +
Subjt:  LRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAAL

Q9SG96 RING-H2 finger protein ATL722.5e-1235.77Show/hide
Query:  IVVSAVLLVVGIAVLVVIHV--CIVGRALRGEGEGIWRSNSNGNSNYG----MKRFSKEDLEKLPCYEYKTRDLEM---ECVVCLENFKNGERCRLLPNC
        +++ A LL   I  L +     C++    R   +    + SN N+N G         K+ L+++P   Y +  ++M   EC++CL +F++GE+ R+LP C
Subjt:  IVVSAVLLVVGIAVLVVIHV--CIVGRALRGEGEGIWRSNSNGNSNYG----MKRFSKEDLEKLPCYEYKTRDLEM---ECVVCLENFKNGERCRLLPNC

Query:  NHSFHVQCIDSWLLNRPICPICR
        NH FHV+CID+WLL+R  CP CR
Subjt:  NHSFHVQCIDSWLLNRPICPICR

Q9SRQ8 RING-H2 finger protein ATL516.7e-1334.58Show/hide
Query:  EGIWRSNSNGNSN-------YGMKRFSKEDLEKLPCYEYKTRDLEME---CVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAALP
        +G   +N+NG +N        G     +  ++ +  Y+Y+  D  +E   C VCL  F+  E  RLLP CNH+FHV CID+WL +   CP+CR F     
Subjt:  EGIWRSNSNGNSN-------YGMKRFSKEDLEKLPCYEYKTRDLEME---CVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAALP

Query:  KISLIQL
         + ++ L
Subjt:  KISLIQL

Arabidopsis top hitse value%identityAlignment
AT1G49210.1 RING/U-box superfamily protein6.2e-1444.58Show/hide
Query:  SNSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEM-----ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR
        S    +SN G+K   K+ L   P   Y +R++ +     ECV+CL +F +GE+ RLLP CNH FHV+CID WL +   CP CR
Subjt:  SNSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEM-----ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR

AT3G03550.1 RING/U-box superfamily protein4.8e-1434.58Show/hide
Query:  EGIWRSNSNGNSN-------YGMKRFSKEDLEKLPCYEYKTRDLEME---CVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAALP
        +G   +N+NG +N        G     +  ++ +  Y+Y+  D  +E   C VCL  F+  E  RLLP CNH+FHV CID+WL +   CP+CR F     
Subjt:  EGIWRSNSNGNSN-------YGMKRFSKEDLEKLPCYEYKTRDLEME---CVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAALP

Query:  KISLIQL
         + ++ L
Subjt:  KISLIQL

AT3G10910.1 RING/U-box superfamily protein1.8e-1335.77Show/hide
Query:  IVVSAVLLVVGIAVLVVIHV--CIVGRALRGEGEGIWRSNSNGNSNYG----MKRFSKEDLEKLPCYEYKTRDLEM---ECVVCLENFKNGERCRLLPNC
        +++ A LL   I  L +     C++    R   +    + SN N+N G         K+ L+++P   Y +  ++M   EC++CL +F++GE+ R+LP C
Subjt:  IVVSAVLLVVGIAVLVVIHV--CIVGRALRGEGEGIWRSNSNGNSNYG----MKRFSKEDLEKLPCYEYKTRDLEM---ECVVCLENFKNGERCRLLPNC

Query:  NHSFHVQCIDSWLLNRPICPICR
        NH FHV+CID+WLL+R  CP CR
Subjt:  NHSFHVQCIDSWLLNRPICPICR

AT5G05280.1 RING/U-box superfamily protein2.4e-1345Show/hide
Query:  NSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR
        ++N N   G+K   K  L+ +P   Y + +L+M   EC++CL +F  GE  R+LP CNH FHV+CID+WLL+   CP CR
Subjt:  NSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR

AT5G17600.1 RING/U-box superfamily protein1.4e-1336.08Show/hide
Query:  LRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAAL
        L   GEG + S    ++N      ++  ++ +  Y+YK+ D  +   +C VCL  F+  E  RLLP CNH+FH+ CID+WL +   CP+CR F   +
Subjt:  LRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATGGAGATTGTTGTATCAGCTGTTCTTTTGGTGGTGGGGATAGCTGTTTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTGAGAGGAGAAGGAGAAGG
AATTTGGAGAAGCAATAGTAATGGTAATAGTAATTATGGGATGAAGAGATTTTCAAAGGAGGATTTGGAGAAACTTCCTTGTTATGAGTACAAAACGAGAGATTTGGAAA
TGGAATGTGTAGTTTGTTTGGAGAATTTCAAAAATGGGGAAAGATGCAGATTGTTGCCTAATTGTAATCATAGTTTTCACGTCCAATGTATAGATTCTTGGCTTTTGAAC
AGACCCATTTGCCCAATTTGTAGAACTTTTGCTGCTGCTCTTCCTAAAATTTCACTGATTCAATTGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATGGAGATTGTTGTATCAGCTGTTCTTTTGGTGGTGGGGATAGCTGTTTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTGAGAGGAGAAGGAGAAGG
AATTTGGAGAAGCAATAGTAATGGTAATAGTAATTATGGGATGAAGAGATTTTCAAAGGAGGATTTGGAGAAACTTCCTTGTTATGAGTACAAAACGAGAGATTTGGAAA
TGGAATGTGTAGTTTGTTTGGAGAATTTCAAAAATGGGGAAAGATGCAGATTGTTGCCTAATTGTAATCATAGTTTTCACGTCCAATGTATAGATTCTTGGCTTTTGAAC
AGACCCATTTGCCCAATTTGTAGAACTTTTGCTGCTGCTCTTCCTAAAATTTCACTGATTCAATTGAATTGA
Protein sequenceShow/hide protein sequence
MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKTRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLN
RPICPICRTFAAALPKISLIQLN