; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G013280 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G013280
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionshort-chain dehydrogenase TIC 32, chloroplastic-like
Genome locationCicolChr01:25279544..25280555
RNA-Seq ExpressionCcUC01G013280
SyntenyCcUC01G013280
Gene Ontology termsGO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019803.1 Short-chain dehydrogenase TIC 32, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-2794.12Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGE
        MASKLLKSIPQGAATTCYVALSPQT RKTG+YFADCNETKCSS+ANDELAARTLW+QTRALILRELGE
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGE

XP_022924073.1 short-chain dehydrogenase TIC 32, chloroplastic-like [Cucurbita moschata]4.3e-2794.12Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGE
        MASKLLKSIPQGAATTCYVALSPQT RKTG+YFADCNETKCSS+ANDELAARTLW+QTRALILRELGE
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGE

XP_023000696.1 short-chain dehydrogenase TIC 32, chloroplastic-like [Cucurbita maxima]3.9e-2897.06Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGE
        MASKLLKSIPQGAATTCYVALSPQTQRKTG+YFADCNETKCSS+ANDELAARTLWMQTRALILRELGE
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGE

XP_038895223.1 short-chain dehydrogenase TIC 32 A, chloroplastic-like isoform X1 [Benincasa hispida]8.7e-2894.29Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGEAA
        MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCN+TKCSS+ANDEL ARTLWMQTRALILRELGE A
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGEAA

XP_038895224.1 short-chain dehydrogenase TIC 32 A, chloroplastic-like isoform X2 [Benincasa hispida]8.7e-2894.29Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGEAA
        MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCN+TKCSS+ANDEL ARTLWMQTRALILRELGE A
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGEAA

TrEMBL top hitse value%identityAlignment
A0A2P5FFY3 Short-chain dehydrogenase/reductase3.3e-1771.21Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILREL
        MASKLLKS+ QGAATTCYVALSPQT+   GKYF DCNE+ CS +ANDE  A  LW QTRAL+ R L
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILREL

A0A4U5MIW5 Short-chain dehydrogenase/reductase family protein3.3e-1771.21Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILREL
        +ASKLLKS  QGA+TTCYVALSPQT+  +GKYFADCNE+ CS++ANDEL A+ LWMQT AL+ R L
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILREL

A0A6J1C5L3 short-chain dehydrogenase TIC 32, chloroplastic-like2.0e-2584.72Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGEAALA
        MASKLLKSIPQGAATTCYVAL+PQT+RKTGKYF+DCNETKCS++AN+ELAAR LWMQTRALI R+LGE A A
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGEAALA

A0A6J1EBB9 short-chain dehydrogenase TIC 32, chloroplastic-like2.1e-2794.12Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGE
        MASKLLKSIPQGAATTCYVALSPQT RKTG+YFADCNETKCSS+ANDELAARTLW+QTRALILRELGE
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGE

A0A6J1KGJ5 short-chain dehydrogenase TIC 32, chloroplastic-like1.9e-2897.06Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGE
        MASKLLKSIPQGAATTCYVALSPQTQRKTG+YFADCNETKCSS+ANDELAARTLWMQTRALILRELGE
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGE

SwissProt top hitse value%identityAlignment
A0A078IS66 Short-chain dehydrogenase TIC 32 A, chloroplastic1.4e-0960Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLW
        M+  L K+IPQGAATTCYVAL P  +  TGKYFADCN T  S+ A D   A  LW
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLW

A0A078ISJ6 Short-chain dehydrogenase TIC 32 B, chloroplastic4.2e-0958.18Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLW
        M+  L K+IPQGAATTCYVAL P  +  TGKYF DCN T  S+ A D   A  LW
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLW

A2RVM0 Short-chain dehydrogenase TIC 32, chloroplastic7.9e-0842.86Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGEAA
        +A  +LKS+PQGAATTCYVAL+PQ    +G+YF D N  K   +  D   A+ +W  +  L   + GE++
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGEAA

Q5R9W5 WW domain-containing oxidoreductase2.2e-0541.79Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELG
        +A    KS+ QGAATT Y A +P+ +   G YF +C     S  A  E  ARTLW  +  LI   LG
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELG

Q6RVV4 Short-chain dehydrogenase TIC 32, chloroplastic2.6e-0649.02Show/hide
Query:  LLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLW
        +LK++ QGAATTCYVAL PQ +  +G+YF+D N  K +    D   A+ LW
Subjt:  LLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLW

Arabidopsis top hitse value%identityAlignment
AT1G64590.1 NAD(P)-binding Rossmann-fold superfamily protein3.2e-1251.61Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALI
        + SKLLKS+PQ AATTCYVA SP+ +   GKYF+DCNE + S   +  L A+ LW  +  L+
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALI

AT4G23420.1 NAD(P)-binding Rossmann-fold superfamily protein1.5e-0950.91Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLW
        +A  ++KS+PQGAATTCYVAL+PQ    TG+YF+D N  K   +  D   A+ LW
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLW

AT4G24050.1 NAD(P)-binding Rossmann-fold superfamily protein2.1e-1148.39Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALI
        +ASKL+K++PQ AATTCYVA +P+    +GKYF DCNET  S +  +   A  LW  +  L+
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALI

AT5G02540.1 NAD(P)-binding Rossmann-fold superfamily protein1.4e-1264.71Show/hide
Query:  LLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLW
        L K+IPQGAATTCYVAL P  +  TGKYFADCNE   S +A DE  A+ LW
Subjt:  LLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLW

AT5G50130.1 NAD(P)-binding Rossmann-fold superfamily protein8.7e-1867.65Show/hide
Query:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGE
        +ASKLLKSI QGAATTCYVALS +T+  +GKYFADCNET CS +ANDE  A  L  Q+RALI   L E
Subjt:  MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAAGTTACTAAAATCCATTCCTCAGGGTGCCGCTACAACATGCTATGTAGCTCTAAGTCCACAAACACAAAGAAAAACAGGAAAATATTTTGCAGATTGTAA
TGAAACTAAGTGTTCATCCGTAGCCAACGACGAGCTAGCAGCACGAACGCTATGGATGCAAACTCGTGCCCTAATTCTCAGAGAACTTGGTGAAGCAGCTCTAGCTACTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAAGTTACTAAAATCCATTCCTCAGGGTGCCGCTACAACATGCTATGTAGCTCTAAGTCCACAAACACAAAGAAAAACAGGAAAATATTTTGCAGATTGTAA
TGAAACTAAGTGTTCATCCGTAGCCAACGACGAGCTAGCAGCACGAACGCTATGGATGCAAACTCGTGCCCTAATTCTCAGAGAACTTGGTGAAGCAGCTCTAGCTACTT
AA
Protein sequenceShow/hide protein sequence
MASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGEAALAT