; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G013650 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G013650
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRNase H domain-containing protein
Genome locationCicolChr01:26138792..26165924
RNA-Seq ExpressionCcUC01G013650
SyntenyCcUC01G013650
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4382082.1 hypothetical protein F8388_001227 [Cannabis sativa]1.3e-0631.03Show/hide
Query:  LKSAISSVERSAVGISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVETDSQM
        L SA ++  ++    ++ W  PP G F +NTD +        G+GV+IRD  G++V AT E IP  +  L AEA+ +   LK+    ++  + + +DSQ 
Subjt:  LKSAISSVERSAVGISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVETDSQM

Query:  LMNIINGESRKSSSKG
        ++N + G++  ++  G
Subjt:  LMNIINGESRKSSSKG

XP_030479463.1 uncharacterized protein LOC115696714 [Cannabis sativa]7.8e-0735.25Show/hide
Query:  QPDPTITPLKSAISSVERSAVGISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPIL
        QP  T T   +  +S ++ A   S  W  P  G FKLN DVA  P +   G+G VIRDSNG +V A +  I       E E   L   L    +  +P+ 
Subjt:  QPDPTITPLKSAISSVERSAVGISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPIL

Query:  LVETDSQMLMNIINGESRKSSS
         VETD+ M+ N +      +SS
Subjt:  LVETDSQMLMNIINGESRKSSS

XP_030483669.1 uncharacterized protein LOC115700241 [Cannabis sativa]7.8e-0726.83Show/hide
Query:  SAISSVERSAV-------GISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVE
        SA S+  R++V         + +W +PP G  KLN+D AC   L ++G+G V+RDS G +V A ++ I       E EA+ L   LK    + + I  +E
Subjt:  SAISSVERSAV-------GISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVE

Query:  TDSQMLMNIINGESRKSSSKGVLFMSKDFVIKWPINWLLRLGPMGE-----KRCGLIALPLGYIRNAIKKSTHWEGHFEPITEKKCWPNKN--FPTIYPE
        TDS +++  +      +S+  ++           +N+L+   P  +     +     A  L      +     W   F P+      PN+N  FP IY  
Subjt:  TDSQMLMNIINGESRKSSSKGVLFMSKDFVIKWPINWLLRLGPMGE-----KRCGLIALPLGYIRNAIKKSTHWEGHFEPITEKKCWPNKN--FPTIYPE

Query:  ESRVR
          R R
Subjt:  ESRVR

XP_039796349.1 uncharacterized protein LOC120661524 [Panicum virgatum]5.9e-0735.4Show/hide
Query:  GISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVETDSQMLMNIINGESRKSS
        G +  W +PP G +K+N D   C +  R   G V+RDS G   +A A C+     AL AEA   +  LK V ++ +  +L+ETDSQ+L+  +  +    +
Subjt:  GISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVETDSQMLMNIINGESRKSS

Query:  SKGVLFMSKDFVI
          GVLF    F+I
Subjt:  SKGVLFMSKDFVI

XP_042939527.1 uncharacterized protein LOC122274566 [Carya illinoinensis]4.5e-0737.86Show/hide
Query:  WLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVETDSQMLMNIINGESRKSSSKGVL
        W  PP+G  KLNTD A   +  ++G+GV++RD NG +V+AT    P     +E E L +L  L++   M +  L+VE DS + +N I  E    S+ G L
Subjt:  WLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVETDSQMLMNIINGESRKSSSKGVL

Query:  FMS
          S
Subjt:  FMS

TrEMBL top hitse value%identityAlignment
A0A1S8ACU2 Ribonuclease H-like superfamily protein8.4e-0728.65Show/hide
Query:  FERKRVDP----TQPDPTI-TPLKSAISSVERSAVGI---SLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEAL
        FE KR DP     + +  + +  +  ++ V+ +A  I      W+ PP G FK N D A   +  +VG+GVVIRD +G++++A            +AEA 
Subjt:  FERKRVDP----TQPDPTI-TPLKSAISSVERSAVGI---SLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEAL

Query:  VLLFCLKVVHEMVVPILLVETDSQMLMNIINGESRKSSSKGVLFMSKDFVIK-WPINWLLRLGPMGEKRCGLIALPLGYIRNAIKKSTHWEG
         + F L+VV E  +  L++ETD Q +++ +     KSS   + +   +   K    N ++ L  + ++ C  IA  L  I    ++S  W+G
Subjt:  VLLFCLKVVHEMVVPILLVETDSQMLMNIINGESRKSSSKGVLFMSKDFVIK-WPINWLLRLGPMGEKRCGLIALPLGYIRNAIKKSTHWEG

A0A7J6GGV5 Uncharacterized protein6.4e-0731.03Show/hide
Query:  LKSAISSVERSAVGISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVETDSQM
        L SA ++  ++    ++ W  PP G F +NTD +        G+GV+IRD  G++V AT E IP  +  L AEA+ +   LK+    ++  + + +DSQ 
Subjt:  LKSAISSVERSAVGISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVETDSQM

Query:  LMNIINGESRKSSSKG
        ++N + G++  ++  G
Subjt:  LMNIINGESRKSSSKG

A0A803P4U9 Uncharacterized protein6.4e-0731.03Show/hide
Query:  LKSAISSVERSAVGISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVETDSQM
        L SA ++  ++    ++ W  PP G F +NTD +        G+GV+IRD  G++V AT E IP  +  L AEA+ +   LK+    ++  + + +DSQ 
Subjt:  LKSAISSVERSAVGISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVETDSQM

Query:  LMNIINGESRKSSSKG
        ++N + G++  ++  G
Subjt:  LMNIINGESRKSSSKG

A0A803Q5N4 Uncharacterized protein6.4e-0736.59Show/hide
Query:  WLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVETDSQMLMNIINGESRKSSSKGVL
        WL+PPSG  KLNTD A   +    G+  ++RDSNG ++ A  + +   V   E EAL + + LK++  + + +  VETDS M++N       KS SKG  
Subjt:  WLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPILLVETDSQMLMNIINGESRKSSSKGVL

Query:  FMSKDFVIKWPINWLLRLGPMGE
         +S  +VI   I +LL   P  +
Subjt:  FMSKDFVIKWPINWLLRLGPMGE

A0A803QE75 Uncharacterized protein3.8e-0735.25Show/hide
Query:  QPDPTITPLKSAISSVERSAVGISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPIL
        QP  T T   +  +S ++ A   S  W  P  G FKLN DVA  P +   G+G VIRDSNG +V A +  I       E E   L   L    +  +P+ 
Subjt:  QPDPTITPLKSAISSVERSAVGISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCLKVVHEMVVPIL

Query:  LVETDSQMLMNIINGESRKSSS
         VETD+ M+ N +      +SS
Subjt:  LVETDSQMLMNIINGESRKSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGCCTCTTTCAATTTTTTGAAAGGAAAAGGGTTGACCCCACCCAACCCGACCCGACCATAACTCCACTCAAATCGGCAATCTCTTCGGTTGAACGTTCG
GCTGTTGGTATTTCTCTGGTTTGGTTGTCACCACCGAGTGGGGCATTCAAACTCAACACTGATGTTGCATGCTGTCCTGATTTGATAAGAGTAGGGATGGGAGTA
GTGATTAGAGATTCCAATGGATCGATGGTTTTAGCTACTGCTGAGTGCATTCCAAATGGTGTTCTAGCGTTGGAGGCGGAAGCTTTGGTTCTTTTGTTTTGCTTG
AAGGTGGTGCATGAGATGGTTGTCCCGATTCTTCTGGTGGAAACAGATTCCCAAATGCTAATGAACATCATTAATGGCGAATCGAGGAAGTCTTCATCTAAGGGA
GTTTTATTTATGTCCAAAGATTTTGTAATCAAGTGGCCCATAAATTGGCTTCTTAGGCTTGGGCCAATGGGGGAAAAGAGGTGTGGACTCATAGCTCTCCCTCTT
GGTTATATCAGGAATGCCATCAAGAAATCGACTCATTGGGAAGGACATTTTGAGCCTATCACTGAAAAAAAATGTTGGCCTAACAAGAACTTCCCCACTATTTAT
CCAGAAGAGTCAAGGGTTAGAGGTATTGGTAGACCATTACTTCCCAAATATAGAACAAGATGGATTGGAGGGAGACATCAATCAAGTCACGTTGTGGCATTTGCA
GACAAGAAGGACATAACCGAAAATGATGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAGGCCTCTTTCAATTTTTTGAAAGGAAAAGGGTTGACCCCACCCAACCCGACCCGACCATAACTCCACTCAAATCGGCAATCTCTTCGGTTGAACGTTCG
GCTGTTGGTATTTCTCTGGTTTGGTTGTCACCACCGAGTGGGGCATTCAAACTCAACACTGATGTTGCATGCTGTCCTGATTTGATAAGAGTAGGGATGGGAGTA
GTGATTAGAGATTCCAATGGATCGATGGTTTTAGCTACTGCTGAGTGCATTCCAAATGGTGTTCTAGCGTTGGAGGCGGAAGCTTTGGTTCTTTTGTTTTGCTTG
AAGGTGGTGCATGAGATGGTTGTCCCGATTCTTCTGGTGGAAACAGATTCCCAAATGCTAATGAACATCATTAATGGCGAATCGAGGAAGTCTTCATCTAAGGGA
GTTTTATTTATGTCCAAAGATTTTGTAATCAAGTGGCCCATAAATTGGCTTCTTAGGCTTGGGCCAATGGGGGAAAAGAGGTGTGGACTCATAGCTCTCCCTCTT
GGTTATATCAGGAATGCCATCAAGAAATCGACTCATTGGGAAGGACATTTTGAGCCTATCACTGAAAAAAAATGTTGGCCTAACAAGAACTTCCCCACTATTTAT
CCAGAAGAGTCAAGGGTTAGAGGTATTGGTAGACCATTACTTCCCAAATATAGAACAAGATGGATTGGAGGGAGACATCAATCAAGTCACGTTGTGGCATTTGCA
GACAAGAAGGACATAACCGAAAATGATGCCTAA
Protein sequenceShow/hide protein sequence
MTGLFQFFERKRVDPTQPDPTITPLKSAISSVERSAVGISLVWLSPPSGAFKLNTDVACCPDLIRVGMGVVIRDSNGSMVLATAECIPNGVLALEAEALVLLFCL
KVVHEMVVPILLVETDSQMLMNIINGESRKSSSKGVLFMSKDFVIKWPINWLLRLGPMGEKRCGLIALPLGYIRNAIKKSTHWEGHFEPITEKKCWPNKNFPTIY
PEESRVRGIGRPLLPKYRTRWIGGRHQSSHVVAFADKKDITENDA