; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G013670 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G013670
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionHistone H2B
Genome locationCicolChr01:26212890..26215392
RNA-Seq ExpressionCcUC01G013670
SyntenyCcUC01G013670
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000558 - Histone H2B
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652780.1 hypothetical protein Csa_022685 [Cucumis sativus]5.1e-1975Show/hide
Query:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPK     AEKKP AEEKK EKA  EKK RAEKKL KDAS+KKK +AKKS+E+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

XP_011654070.2 histone H2B [Cucumis sativus]5.1e-1975Show/hide
Query:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPK     AEKKP AEEKK EKA  EKK RAEKKL KDAS+KKK +AKKS+E+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

XP_022964641.1 histone H2B.7-like [Cucurbita moschata]2.3e-1976.19Show/hide
Query:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPK     AEKKP AEEKK EKA  EKK RAEKKL KDAS+KKK KAKKS+E+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

XP_023875977.1 probable histone H2B.1 [Quercus suber]3.0e-1977.11Show/hide
Query:  MAPKAEKKPT----AEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPKAEKKP     AEEKK EKA  EKK RAEKKL KDASEKKK ++KKSVE+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPKAEKKPT----AEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

XP_038893815.1 histone H2B.7-like [Benincasa hispida]5.1e-1975Show/hide
Query:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPK     AEKKP AEEKK EKA  EKK RAEKKL KDAS+KKK +AKKS+E+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

TrEMBL top hitse value%identityAlignment
A0A0A0LV55 Histone H2B2.5e-1975Show/hide
Query:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPK     AEKKP AEEKK EKA  EKK RAEKKL KDAS+KKK +AKKS+E+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

A0A5A7SNI2 Histone H2B2.5e-1975Show/hide
Query:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPK     AEKKP AEEKK EKA  EKK RAEKKL KDAS+KKK +AKKS+E+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

A0A6J1HJI6 Histone H2B1.1e-1976.19Show/hide
Query:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPK     AEKKP AEEKK EKA  EKK RAEKKL KDAS+KKK KAKKS+E+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

A0A6J1I594 Histone H2B1.1e-1976.19Show/hide
Query:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPK     AEKKP AEEKK EKA  EKK RAEKKL KDAS+KKK KAKKS+E+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

A0A7N2KMB1 Histone H2B3.3e-1975.9Show/hide
Query:  MAPKAEKKPT----AEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPKAEKKP     AEEKK EKA  EKK RAEKKL KD+SEKKK ++KKSVE+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPKAEKKPT----AEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

SwissProt top hitse value%identityAlignment
O22582 Histone H2B2.5e-1666.29Show/hide
Query:  MAPKAEKKPT----AEEKK--FEKALVEKKLRAEKKLSKD----ASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPKAEKKP     AEEKK   EKA  EKK +A KKL K+    A +KKK + KKSVE+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPKAEKKPT----AEEKK--FEKALVEKKLRAEKKLSKD----ASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

O65821 Histone H2B.11.1e-1666.67Show/hide
Query:  MAPKAEKKPT----AEEKKFEKALVEKKLRAEKKLSKDA-SEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPKA KKP      EEKK E+   EKK +A KKL KDA ++KKK K+KKSVE+YKIYI KVLKQVHPDIGIS+++MGIMN+ I
Subjt:  MAPKAEKKPT----AEEKKFEKALVEKKLRAEKKLSKDA-SEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

Q1S9I9 Probable histone H2B.13.2e-1665.56Show/hide
Query:  MAPKAEKKPT----AEEKK---FEKALVEKKLRAEKKLSKD----ASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPK EKKP     AEEKK    EKA  EKK +A KKL K+    A EKKK ++KKSVE+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPKAEKKPT----AEEKK---FEKALVEKKLRAEKKLSKD----ASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

Q1SU99 Probable histone H2B.31.1e-1670.13Show/hide
Query:  KAEKKPTAEEKKFEKALVEKKLRAEKKLSKD-ASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        KAEKKP AE+K  EKA  EKK +AEKK+SK+ +S+KKK + KKSVE+YKIYI KVLKQVHPDIG+S++AMGIMN+ I
Subjt:  KAEKKPTAEEKKFEKALVEKKLRAEKKLSKD-ASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

Q9ZUS0 Histone H2B.41.7e-1769.14Show/hide
Query:  MAPKAEKKPTAEEKKFEKALVEKKLRAEKKLSKDA--SEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPKA +K  AE+K   KA  EK  +AEKK+SKDA  SEKKK K+KKSVE+YKIYI KVLKQVHPD+GIS +AMGIMN+ I
Subjt:  MAPKAEKKPTAEEKKFEKALVEKKLRAEKKLSKDA--SEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

Arabidopsis top hitse value%identityAlignment
AT1G07790.1 Histone superfamily protein3.3e-1660Show/hide
Query:  MAPKAEKK----------PTAEEKKFEKALVEKKLRAEKKL-SKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAP+AEKK          P  E K  EKA  EKK +A KKL  K+A +KKK ++KK+VE+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPKAEKK----------PTAEEKKFEKALVEKKLRAEKKL-SKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

AT2G37470.1 Histone superfamily protein1.2e-1869.14Show/hide
Query:  MAPKAEKKPTAEEKKFEKALVEKKLRAEKKLSKDA--SEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPKA +K  AE+K   KA  EK  +AEKK+SKDA  SEKKK K+KKSVE+YKIYI KVLKQVHPD+GIS +AMGIMN+ I
Subjt:  MAPKAEKKPTAEEKKFEKALVEKKLRAEKKLSKDA--SEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

AT3G46030.1 Histone superfamily protein6.7e-1764.37Show/hide
Query:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDA---SEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPK     AEKKP  E+ K EKA  EKK +A KKL K+A    +KKK   KKSVE+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPK-----AEKKPTAEEKKFEKALVEKKLRAEKKLSKDA---SEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

AT3G53650.1 Histone superfamily protein3.9e-1765Show/hide
Query:  MAPKAEKKPTAEEKKFEKALVEKKLRAEKKLSKD-ASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPKA +K  A +K  EKA  EK  +AEKK++K+  SEKKK K+KK++E+YKIYI KVLKQVHPDIGIS +AMGIMN+ I
Subjt:  MAPKAEKKPTAEEKKFEKALVEKKLRAEKKLSKD-ASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI

AT5G59910.1 Histone superfamily protein2.5e-1660.87Show/hide
Query:  MAPKAEK----------KPTAEEKKFEKALVEKKLRAEKKLSKDA---SEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI
        MAPKAEK          KP  E+ K EKA  EKK +A KKL K+A    +KKK   KKSVE+YKIYI KVLKQVHPDIGIS++AMGIMN+ I
Subjt:  MAPKAEK----------KPTAEEKKFEKALVEKKLRAEKKLSKDA---SEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCAAAAGCCGAGAAGAAGCCAACGGCGGAGGAGAAGAAGTTTGAGAAGGCTCTGGTGGAGAAGAAGCTGAGAGCCGAGAAGAAACTTTCCAAAGACGCCTCTGA
AAAGAAGAAGAACAAGGCTAAGAAGAGCGTTGAGAGTTACAAGATCTACATCCTCAAGGTGCTCAAGCAAGTCCATCCTGACATTGGAATCTCCAACGAAGCCATGGGGA
TTATGAACGCAGGCATTTGGAAGGTCAAACGATGTCCAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACCAAAAGCCGAGAAGAAGCCAACGGCGGAGGAGAAGAAGTTTGAGAAGGCTCTGGTGGAGAAGAAGCTGAGAGCCGAGAAGAAACTTTCCAAAGACGCCTCTGA
AAAGAAGAAGAACAAGGCTAAGAAGAGCGTTGAGAGTTACAAGATCTACATCCTCAAGGTGCTCAAGCAAGTCCATCCTGACATTGGAATCTCCAACGAAGCCATGGGGA
TTATGAACGCAGGCATTTGGAAGGTCAAACGATGTCCAAATTGA
Protein sequenceShow/hide protein sequence
MAPKAEKKPTAEEKKFEKALVEKKLRAEKKLSKDASEKKKNKAKKSVESYKIYILKVLKQVHPDIGISNEAMGIMNAGIWKVKRCPN