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CcUC01G013770 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G013770
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionReverse transcriptase
Genome locationCicolChr01:26395516..26395842
RNA-Seq ExpressionCcUC01G013770
SyntenyCcUC01G013770
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149380.1 uncharacterized protein LOC111017810 [Momordica charantia]1.0e-0851.56Show/hide
Query:  AFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL
        A Q L +N       Q + P R  IP +E QFIR+FKR+GP  FNG SE+ TAAE+W+ ELE L
Subjt:  AFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL

XP_022155925.1 uncharacterized protein LOC111022925 [Momordica charantia]2.3e-0851.56Show/hide
Query:  AFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL
        A Q L +N       Q + P RG I  +E QFIR+FKR+GP  FNG SE+ TAAE+W+ ELE L
Subjt:  AFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL

XP_022157413.1 uncharacterized protein LOC111024114 [Momordica charantia]1.3e-0842.7Show/hide
Query:  PTEQTGRKGEPSHPSKSSPNHLTPGAFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL
        P  Q   +G P    + +   L   A Q L +N       Q + P R  IP DE QFIR+FKR+GP  FNG SE+ TA E+W+ ELE L
Subjt:  PTEQTGRKGEPSHPSKSSPNHLTPGAFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL

XP_022158637.1 uncharacterized protein LOC111025088 [Momordica charantia]4.6e-0954.69Show/hide
Query:  AFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL
        A QAL NN       Q   P     P  E QFI++FKRYGP TF+GGSE+ATAAE W+ ELE L
Subjt:  AFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL

XP_022159307.1 uncharacterized protein LOC111025716, partial [Momordica charantia]1.0e-0855.74Show/hide
Query:  ALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL
        AL NN       Q + P     P  E QFI++FKRYGP TF+GGSEKATAAE+W+ ELE L
Subjt:  ALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL

TrEMBL top hitse value%identityAlignment
A0A6J1D5J7 uncharacterized protein LOC1110178104.9e-0951.56Show/hide
Query:  AFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL
        A Q L +N       Q + P R  IP +E QFIR+FKR+GP  FNG SE+ TAAE+W+ ELE L
Subjt:  AFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL

A0A6J1DNV8 uncharacterized protein LOC1110229251.1e-0851.56Show/hide
Query:  AFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL
        A Q L +N       Q + P RG I  +E QFIR+FKR+GP  FNG SE+ TAAE+W+ ELE L
Subjt:  AFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL

A0A6J1DTA8 uncharacterized protein LOC1110241146.5e-0942.7Show/hide
Query:  PTEQTGRKGEPSHPSKSSPNHLTPGAFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL
        P  Q   +G P    + +   L   A Q L +N       Q + P R  IP DE QFIR+FKR+GP  FNG SE+ TA E+W+ ELE L
Subjt:  PTEQTGRKGEPSHPSKSSPNHLTPGAFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL

A0A6J1DXQ7 uncharacterized protein LOC1110250882.2e-0954.69Show/hide
Query:  AFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL
        A QAL NN       Q   P     P  E QFI++FKRYGP TF+GGSE+ATAAE W+ ELE L
Subjt:  AFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL

A0A6J1DZH0 uncharacterized protein LOC1110257164.9e-0955.74Show/hide
Query:  ALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL
        AL NN       Q + P     P  E QFI++FKRYGP TF+GGSEKATAAE+W+ ELE L
Subjt:  ALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELELL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCCACGTGGACGGAGACCTAGAGGAGGCTTAGGCATCTTTCGCTTCCTTCCGACGGAGCAAACAGGCAGAAAGGGCGAACCCTCCCATCCCTCCAAAAGT
TCCCCCAATCATCTAACGCCCGGTGCTTTCCAGGCTCTTTTCAATAACTTGACCCAGAGAAATGACGGGCAACCTCGCAACCCACATCGAGGTCCAATCCCTCCA
GACGAAGGTCAGTTTATAAGGAATTTCAAGCGCTATGGGCCTTCGACCTTCAACGGTGGGTCAGAGAAAGCTACGGCAGCTGAGCAGTGGATTGTAGAGCTGGAG
TTATTGTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGCCACGTGGACGGAGACCTAGAGGAGGCTTAGGCATCTTTCGCTTCCTTCCGACGGAGCAAACAGGCAGAAAGGGCGAACCCTCCCATCCCTCCAAAAGT
TCCCCCAATCATCTAACGCCCGGTGCTTTCCAGGCTCTTTTCAATAACTTGACCCAGAGAAATGACGGGCAACCTCGCAACCCACATCGAGGTCCAATCCCTCCA
GACGAAGGTCAGTTTATAAGGAATTTCAAGCGCTATGGGCCTTCGACCTTCAACGGTGGGTCAGAGAAAGCTACGGCAGCTGAGCAGTGGATTGTAGAGCTGGAG
TTATTGTGTTGA
Protein sequenceShow/hide protein sequence
MPPRGRRPRGGLGIFRFLPTEQTGRKGEPSHPSKSSPNHLTPGAFQALFNNLTQRNDGQPRNPHRGPIPPDEGQFIRNFKRYGPSTFNGGSEKATAAEQWIVELE
LLC