; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G015690 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G015690
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionGTPase IMAP family member 1, putative
Genome locationCicolChr01:28537445..28537912
RNA-Seq ExpressionCcUC01G015690
SyntenyCcUC01G015690
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652531.1 hypothetical protein Csa_013077, partial [Cucumis sativus]1.6e-2366.33Show/hide
Query:  GGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFFIATAIPY
        G  R  E AAEMVEEWK+MI+  CVSSAIGIATVSV I+T+LPN+FQ LS+ VLLCF  V F +M  SI F+ +SKILYCVGG L  ++ FIATAIPY
Subjt:  GGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFFIATAIPY

KAE8652532.1 hypothetical protein Csa_023780, partial [Cucumis sativus]1.5e-0875.93Show/hide
Query:  LWESLKEE--------GGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQI
        LWESLK E         GGRKL  AAEMVEEWKEMIVALCVSSA+GIATVSVQI
Subjt:  LWESLKEE--------GGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQI

KAG6572911.1 hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia]9.7e-3765.38Show/hide
Query:  WVGNWIRKACSLWESLKE--EGGG------RKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQK
        W  N I KA  LWE L++  EGGG          AAAEMVEEWK+MIVA CVSSAI IATVSVQIE KLP  F FLS+ +LLCFGFV FGKMTKSI  ++
Subjt:  WVGNWIRKACSLWESLKE--EGGG------RKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQK

Query:  VSKILYCVGGFLGVTAFFIATAIPYSPYFQFIIFLLYLIFCFVSMLITTTHNPSSS
        VS+ILYCVGG LGVTA FIA+AIPY+ YFQ IIFL+YLIF  + ML+   H  SSS
Subjt:  VSKILYCVGGFLGVTAFFIATAIPYSPYFQFIIFLLYLIFCFVSMLITTTHNPSSS

KAG6584385.1 hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia]2.9e-1748.78Show/hide
Query:  EEGGGRKLE----AAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFFIAT
        EE G  + +    +A EM+ +W+ M+V  C+ +AI IATVSVQI+TKL   FQFLS  ++ CF F    K+   I  Q+VS ILY +GGF  VTAFFIA 
Subjt:  EEGGGRKLE----AAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFFIAT

Query:  AIPYSPYFQFIIFLLYLIFCFVS
        AIPY+ +FQ +   LYL+F F++
Subjt:  AIPYSPYFQFIIFLLYLIFCFVS

KGN60003.2 hypothetical protein Csa_000735, partial [Cucumis sativus]5.6e-1660.92Show/hide
Query:  SLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKIL
        ++W      G  R LE  AEMVEE KEMI+  C+SSAIGIATVSVQ +TKLPN+FQFLS+ VL+CF  VGF +M  SI F+ +SKIL
Subjt:  SLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKIL

TrEMBL top hitse value%identityAlignment
A0A0A0LCY2 Uncharacterized protein7.0e-3360.56Show/hide
Query:  SLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFF
        ++W      G  R LE  AEMVEE KEMI+  C+SSAIGIATVSVQ +TKLPN+FQFLS+ VL+CF  VGF +M  SI F+ +SKILYC GGFL  T  F
Subjt:  SLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFF

Query:  IATAIPYSPYFQFIIFLLYLIFCFV-SMLITTTHNPSSSSTS
        IATAIPY  +F  I+ +LY IFC +  MLI+ THNPSS S+S
Subjt:  IATAIPYSPYFQFIIFLLYLIFCFV-SMLITTTHNPSSSSTS

A0A0A0LEV1 Uncharacterized protein2.9e-1036.72Show/hide
Query:  LEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFFIATAIPYSPYFQFI
        +E  A+MVEE K  I+    +    IA +SVQ + KLP++F+F+S+  LLC        M    +F+  +K+LY +G F  +T++ IA AIP   YF  +
Subjt:  LEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFFIATAIPYSPYFQFI

Query:  IFLLYLIFCF-VSMLITTTHNPSSSSTS
        + LL+LI C  + +L++ T +P +S+T+
Subjt:  IFLLYLIFCF-VSMLITTTHNPSSSSTS

A0A0A0LQB6 Uncharacterized protein1.0e-5577.02Show/hide
Query:  RCWVGNWIRKACSLWESLKEE--------GGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIET--KLPNTFQFLSVVVLLCFGFVGFGKMTKSI
        RCWVG+ IRKAC LWESLK E         GGRKL   AEMVEEWKEMIVALCVSSAIGIATVSVQIET  +LP TFQFLS+VVLLCFGFVGF KMTK I
Subjt:  RCWVGNWIRKACSLWESLKEE--------GGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIET--KLPNTFQFLSVVVLLCFGFVGFGKMTKSI

Query:  NFQKVSKILYCVGGFLGVTAFFIATAIPYSPYFQFIIFLLYLIFCFVSMLITTTHNPSSSS
         F+ VSKILYCVGGFLGVTAFFIATAIP++PYFQ IIF+LYL+FCF+ MLITT HN   SS
Subjt:  NFQKVSKILYCVGGFLGVTAFFIATAIPYSPYFQFIIFLLYLIFCFVSMLITTTHNPSSSS

A0A0A0LQP5 Uncharacterized protein2.1e-2451.28Show/hide
Query:  VGNWIRKACSLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVG
        VG W R+           G  R LE  AE VEE KE I+ LCVSSAIGI T SVQI+TKLPN+FQ LS+ +LLCF  V F +M +S+ F+ +S+ILYCVG
Subjt:  VGNWIRKACSLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVG

Query:  GFLGVTAFFIATAIPY-SPYFQFIIFLLYLIFCFVSML----ITTTHN-PSSSSTS
         F+  T  FIATAI Y   +F  I+ +LY IFC + ++    I+ THN PSS S+S
Subjt:  GFLGVTAFFIATAIPY-SPYFQFIIFLLYLIFCFVSML----ITTTHN-PSSSSTS

A0A0A0LSX4 Uncharacterized protein2.1e-2460.36Show/hide
Query:  SLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFF
        ++W      G  R  E AAEMVEEWK+MI+  CVSSAIGIATVSV I+T+LPN+FQ LS+ VLLCF  V F +M  SI F+ +SKILYCVGG L  ++ F
Subjt:  SLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFF

Query:  IATAIPYSPYF
        IATAIPY+  F
Subjt:  IATAIPYSPYF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTGTTGGGTTGGAAATTGGATTAGGAAGGCATGTAGTTTATGGGAATCATTAAAGGAAGAAGGCGGTGGCCGGAAACTGGAGGCGGCGGCGGAGATGGTGGAGGA
ATGGAAGGAAATGATAGTAGCATTGTGTGTGTCATCGGCAATAGGGATAGCAACAGTGTCTGTTCAAATAGAAACAAAACTCCCAAATACATTTCAGTTTCTATCGGTTG
TCGTGTTGTTGTGTTTTGGATTTGTGGGTTTTGGAAAAATGACCAAATCCATTAATTTCCAAAAAGTTTCAAAGATTTTGTATTGTGTGGGAGGATTTTTGGGGGTGACA
GCCTTTTTCATAGCCACTGCCATTCCATATTCCCCATATTTTCAGTTCATCATTTTCCTCCTTTACTTGATCTTTTGCTTCGTTTCCATGCTAATCACCACCACCCACAA
CCCTTCTTCTTCCTCCACTTCCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTTGTTGGGTTGGAAATTGGATTAGGAAGGCATGTAGTTTATGGGAATCATTAAAGGAAGAAGGCGGTGGCCGGAAACTGGAGGCGGCGGCGGAGATGGTGGAGGA
ATGGAAGGAAATGATAGTAGCATTGTGTGTGTCATCGGCAATAGGGATAGCAACAGTGTCTGTTCAAATAGAAACAAAACTCCCAAATACATTTCAGTTTCTATCGGTTG
TCGTGTTGTTGTGTTTTGGATTTGTGGGTTTTGGAAAAATGACCAAATCCATTAATTTCCAAAAAGTTTCAAAGATTTTGTATTGTGTGGGAGGATTTTTGGGGGTGACA
GCCTTTTTCATAGCCACTGCCATTCCATATTCCCCATATTTTCAGTTCATCATTTTCCTCCTTTACTTGATCTTTTGCTTCGTTTCCATGCTAATCACCACCACCCACAA
CCCTTCTTCTTCCTCCACTTCCCTTTGA
Protein sequenceShow/hide protein sequence
MRCWVGNWIRKACSLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVT
AFFIATAIPYSPYFQFIIFLLYLIFCFVSMLITTTHNPSSSSTSL