; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G016140 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G016140
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLYR motif-containing protein 4
Genome locationCicolChr01:28964164..28964430
RNA-Seq ExpressionCcUC01G016140
SyntenyCcUC01G016140
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5807263.1 putative complex 1 LYR protein [Helianthus annuus]9.5e-2979.07Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDV
        MATPSRSE+L+LFRSLLR+ARQFPDYNIREYTKRRTIDAFR N+TLS+ SSI++A++ G++QL+VAKRQA+VYSLYAPK KSIMD+
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDV

KAG6607477.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]4.4e-3491.95Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN
        MA PSRSE+L+LFRSLLRTARQFPDYNIREYTKRRTIDAFRENQ+LSD SSISS YAGGKAQLEVAKRQALVYSLYAPK KSIMDVN
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN

KGN64034.1 hypothetical protein Csa_014098 [Cucumis sativus]9.8e-3490.8Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN
        MATPS SE+LSLFRSLLRTARQFPDYNIREY KRRTID+FRENQTLSDASSISS YAGG+AQLEVAKRQA+VYSLYAPK KSIMDVN
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN

XP_022137452.1 LYR motif-containing protein 4 [Momordica charantia]3.7e-3390.91Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL
        MATPSRSE+LSLFRSLLRTARQF DYNIREYTKRR IDAFREN++LSD SSISSAYAGGKAQLEVAKRQALVYSLYAPK KSIMDV L
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL

XP_038894896.1 LYR motif-containing protein 4 [Benincasa hispida]1.6e-3697.73Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL
        MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQ+LSDASSISSAYAGGKAQLEVAKRQALVYSLYAPK KSIMDVNL
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL

TrEMBL top hitse value%identityAlignment
A0A0A0LST7 Uncharacterized protein4.7e-3490.8Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN
        MATPS SE+LSLFRSLLRTARQFPDYNIREY KRRTID+FRENQTLSDASSISS YAGG+AQLEVAKRQA+VYSLYAPK KSIMDVN
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN

A0A1S3XFP4 LYR motif-containing protein 43.9e-2874.71Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN
        MA+PSR EVL+LFRSLL+TARQFPDYNIREYTKRRTID FR+N+ LSD S +++A++ G+AQLEVAKRQA+VYSLYAPK KS+M++N
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN

A0A251UU63 Putative complex 1 LYR protein4.6e-2979.07Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDV
        MATPSRSE+L+LFRSLLR+ARQFPDYNIREYTKRRTIDAFR N+TLS+ SSI++A++ G++QL+VAKRQA+VYSLYAPK KSIMD+
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDV

A0A2J6KBZ0 Uncharacterized protein3.9e-2877.38Show/hide
Query:  TPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDV
        TPSR+E+++LFRSLLR+ARQFPDYNIREYTKRRTIDAFR+N+TLS+ SSI++A+  GK+QL+VAKRQA+VYSLYAPK KSIMD+
Subjt:  TPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDV

A0A6J1C8A4 LYR motif-containing protein 41.8e-3390.91Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL
        MATPSRSE+LSLFRSLLRTARQF DYNIREYTKRR IDAFREN++LSD SSISSAYAGGKAQLEVAKRQALVYSLYAPK KSIMDV L
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL

SwissProt top hitse value%identityAlignment
B5FZA8 LYR motif-containing protein 42.7e-1045.45Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA
        MA  SR++VL L+R+LLR +++F  YN R Y  RR  DAFREN+ ++D+  I       KA LEV +RQ  +  +YA
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA

B5XD90 LYR motif-containing protein 4B1.2e-0735.44Show/hide
Query:  SEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMD
        ++VLSL+R L++ + +FP YN R Y  RR  DAFR N+++ D   +      G+  L++ +RQ  +  +Y P  K+I++
Subjt:  SEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMD

Q0VCG0 LYR motif-containing protein 41.6e-0738.96Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA
        MA  SR++VL L+R++LR +++F  YN R Y  RR  DAFREN+ + D   I +     K  L + +RQ  +  +Y+
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA

Q8K215 LYR motif-containing protein 42.5e-0840.26Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA
        MA  SR++VL L+R+++R ++ F  YN R Y  RR  DAFREN+ + D   I +     K  LE+ +RQ  +  LY+
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA

Q9HD34 LYR motif-containing protein 41.5e-0842.86Show/hide
Query:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA
        MA  SR++VLSL+R++LR +++F  YN R Y  RR  DAFREN+ + D   I +     K  L V +RQ  +  LY+
Subjt:  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA

Arabidopsis top hitse value%identityAlignment
AT5G61220.1 LYR family of Fe/S cluster biogenesis protein2.7e-2161.9Show/hide
Query:  SRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL
        S SEVLSL R+LLR  RQFPDYNIREY+KRRT+D FR N+ L+D S ++ AYA  K QL VA+R   VY  Y PK K+IM+V L
Subjt:  SRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCCATCGAGGTCTGAGGTCCTCTCGCTCTTTCGTTCTCTGCTGCGAACGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGC
ACCATCGATGCCTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCAATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCC
CTTGTTTACTCTCTTTACGCACCTAAGGCCAAGAGTATCATGGATGTCAACCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTCCATCGAGGTCTGAGGTCCTCTCGCTCTTTCGTTCTCTGCTGCGAACGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGC
ACCATCGATGCCTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCAATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCC
CTTGTTTACTCTCTTTACGCACCTAAGGCCAAGAGTATCATGGATGTCAACCTCTGA
Protein sequenceShow/hide protein sequence
MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL