; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G016380 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G016380
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationCicolChr01:29117054..29117950
RNA-Seq ExpressionCcUC01G016380
SyntenyCcUC01G016380
Gene Ontology termsGO:0009416 - response to light stimulus (biological process)
GO:0009765 - photosynthesis, light harvesting (biological process)
GO:0009579 - thylakoid (cellular component)
GO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137413.1 chlorophyll a-b binding protein P4, chloroplastic [Cucumis sativus]2.1e-6757.6Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR
        M TV TQASA VFRPC SRSRFLSGSSGKFNRALSVKPTTSS+ N+FKVEAKKGEWLPGLPSP YLDGSLPGDNGFDPLGLAEDP+NLRWY QAELVNGR
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR

Query:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL
        W MLGVAGM +                                       Y E R+ +                                P +    ++ 
Subjt:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL

Query:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLR
          K  + GRLAM AFLGFIVQHNVTGKGPFDNF+QHISDPWHNTIVQTLR
Subjt:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLR

XP_022137160.1 chlorophyll a-b binding protein P4, chloroplastic-like [Momordica charantia]1.2e-6556.97Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR
        M T  TQASA VFRPC SRSRFLSGSSGKFNRALSVKPT SS+   FKVEAKKGEWLPGLPSPAYLDGSL GDNGFDPLGLAEDP+NLRWYVQAELVNGR
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR

Query:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL
        W MLGVAGM +                                       Y E R+ +                                P +    ++ 
Subjt:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL

Query:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
          K  + GRLAM AFLGFIVQHNVTGKGPFDNFLQHISDPWHNTI+QTLRG
Subjt:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG

XP_022998805.1 chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita maxima]1.5e-6556.97Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR
        M  V  QASA VFRP  SRSRFLSGSSGKFNRALSVKPTTS V +SFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDP+NLRWYVQAELVNGR
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR

Query:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL
        W MLGVAGM +                                       Y E R+ +                                P +    ++ 
Subjt:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL

Query:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
          K  + GRLAM AFLGFI+QHNVTGKGPFDNFLQHISDPWHNT+VQTLRG
Subjt:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG

XP_023524863.1 chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita pepo subsp. pepo]6.9e-6657.37Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR
        M  V  QASA VFRP  SRSRFLSGSSGKFNRALSVKPTTSSV +SFKVEAKKGEWLPGLPSP YLDGSLPGDNGFDPLGLAEDP+NLRWYVQAELVNGR
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR

Query:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL
        W MLGVAGM +                                       Y E R+ +                                P +    ++ 
Subjt:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL

Query:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
          K  + GRLAM AFLGFI+QHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
Subjt:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG

XP_038894825.1 chlorophyll a-b binding protein P4, chloroplastic-like [Benincasa hispida]2.8e-6758.17Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR
        M TV TQASA VFRPC  RSRFLS +SGKFNR LSVKPTTSSV NSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDP+NLRWYVQAELVNGR
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR

Query:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL
        W MLGVAGM +                                       Y E R+ +                                P +    ++ 
Subjt:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL

Query:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
          K  + GRLAM AFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
Subjt:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG

TrEMBL top hitse value%identityAlignment
A0A0A0LTE5 Chlorophyll a-b binding protein, chloroplastic1.0e-6757.6Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR
        M TV TQASA VFRPC SRSRFLSGSSGKFNRALSVKPTTSS+ N+FKVEAKKGEWLPGLPSP YLDGSLPGDNGFDPLGLAEDP+NLRWY QAELVNGR
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR

Query:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL
        W MLGVAGM +                                       Y E R+ +                                P +    ++ 
Subjt:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL

Query:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLR
          K  + GRLAM AFLGFIVQHNVTGKGPFDNF+QHISDPWHNTIVQTLR
Subjt:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLR

A0A5A7UWR2 Chlorophyll a-b binding protein, chloroplastic6.9e-6454.58Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR
        M TVTTQASA VFRPC +RSRFLSGSSGK +R LSVKP ++S  +SFKVEAKKGEWLPGLPSPAYL+GSLPGDNGFDPLGLAEDP+NLRW+VQAELVNGR
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR

Query:  WEMLGVAGM-------------------------------------------KMARYKE-------------------PRKC-------KPRSHFQAIQL
        W MLGVAGM                                           ++ R+++                   P +C        P +    ++ 
Subjt:  WEMLGVAGM-------------------------------------------KMARYKE-------------------PRKC-------KPRSHFQAIQL

Query:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
          K  + GRLAM AFLGFIVQHNVTGKGPFDN LQHISDPWHNTIVQT  G
Subjt:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG

A0A6J1C5V9 Chlorophyll a-b binding protein, chloroplastic5.7e-6656.97Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR
        M T  TQASA VFRPC SRSRFLSGSSGKFNRALSVKPT SS+   FKVEAKKGEWLPGLPSPAYLDGSL GDNGFDPLGLAEDP+NLRWYVQAELVNGR
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR

Query:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL
        W MLGVAGM +                                       Y E R+ +                                P +    ++ 
Subjt:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL

Query:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
          K  + GRLAM AFLGFIVQHNVTGKGPFDNFLQHISDPWHNTI+QTLRG
Subjt:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG

A0A6J1GBT1 Chlorophyll a-b binding protein, chloroplastic2.8e-6556.97Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR
        M  V  QASA VFRP  SRSRFL GSSGKFNRALSVKPTTS V +SFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDP+NLRWYVQAELVNGR
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR

Query:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL
        W MLGVAGM +                                       Y E R+ +                                P +    ++ 
Subjt:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL

Query:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
          K  + GRLAM AFLGFI+QHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
Subjt:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG

A0A6J1KDI3 Chlorophyll a-b binding protein, chloroplastic7.4e-6656.97Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR
        M  V  QASA VFRP  SRSRFLSGSSGKFNRALSVKPTTS V +SFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDP+NLRWYVQAELVNGR
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR

Query:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL
        W MLGVAGM +                                       Y E R+ +                                P +    ++ 
Subjt:  WEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------------PRSHFQAIQL

Query:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
          K  + GRLAM AFLGFI+QHNVTGKGPFDNFLQHISDPWHNT+VQTLRG
Subjt:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG

SwissProt top hitse value%identityAlignment
P27521 Chlorophyll a-b binding protein 4, chloroplastic6.7e-5650.2Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSV-LNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNG
        M TVTT ASA +FRPC S+ RFL+GSSG+ NR LS     SS   +SFKVEAKKGEWLPGL SP YL GSL GDNGFDPLGLAEDP+NL+W+VQAELVNG
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSV-LNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNG

Query:  RWEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------PRSHFQAIQLA----
        RW MLGVAGM +                                       Y E R+ +                          P   F  +  A    
Subjt:  RWEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------PRSHFQAIQLA----

Query:  --TKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQT
           K  + GRLAM AFLGF+VQHNVTGKGPF+N LQH+SDPWHNTIVQT
Subjt:  --TKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQT

Q01667 Chlorophyll a-b binding protein 6, chloroplastic4.1e-2132.88Show/hide
Query:  LSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGM-------------
        LS S  KF  A    P   +V    ++ A    W+PG P PAYLDGS PGD GFDPLGL E P NL  Y ++EL++ RW ML V G+             
Subjt:  LSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGM-------------

Query:  ----------------------------------------KMARYKEPRKCK-PRSHFQAI----------QLATKRFSTGRLAMFAFLGFIVQHNV-TG
                                                + +  K+P K K P   F  +          +L  K    GRLA+ AF+GF VQ +   G
Subjt:  ----------------------------------------KMARYKEPRKCK-PRSHFQAI----------QLATKRFSTGRLAMFAFLGFIVQHNV-TG

Query:  KGPFDNFLQHISDPWHNTI
         GP +N   H++DPWHN I
Subjt:  KGPFDNFLQHISDPWHNTI

Q36718 Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment)3.7e-3843.94Show/hide
Query:  KGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGM-------------------------------------------
        KG WLPGL SPAYLDGSL GDNGFDPL LAEDP++LRW+VQA++VNGRW MLGVAGM                                           
Subjt:  KGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGM-------------------------------------------

Query:  KMARYKE-------------------PRKC-KPRSHFQAIQLA-----TKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
        ++ R+++                   P +C  P   F  +  A      K  + GRLAM AFLGF+VQHNV GKGPF+N  QH++DPWHNTI+QT+ G
Subjt:  KMARYKE-------------------PRKC-KPRSHFQAIQLA-----TKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG

Q9C639 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic1.5e-2634.8Show/hide
Query:  RALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGM----------------------
        R  SVK     +  +  VE  +  WLPGL  P YLDG+L GD GFDPLGL EDP++L+WYVQAELV+ R+ MLGVAG+                      
Subjt:  RALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGM----------------------

Query:  ----------------------KMARYKE----PRKCKPRSHFQAIQLA------------------------------TKRFSTGRLAMFAFLGFIVQH
                              +  RY +      + K  S F  ++ A                               K    GRLAM A LGF VQ 
Subjt:  ----------------------KMARYKE----PRKCKPRSHFQAIQLA------------------------------TKRFSTGRLAMFAFLGFIVQH

Query:  NVTGKGPFDNFLQHISDPWHNTIVQTL
        +VT  GP DN ++H+S+PWH TI+QTL
Subjt:  NVTGKGPFDNFLQHISDPWHNTIVQTL

Q9SQL2 Chlorophyll a-b binding protein P4, chloroplastic1.2e-6051Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR
        M TVTTQASA +F PC  +SRFL GSSGK NR ++ +P   S   SFKVEAKKGEWLPGL SP YL GSLPGDNGFDPLGLAEDP+NLRW+VQAELVNGR
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGR

Query:  WEMLGVAGMK-------------------------------------MARYKEPRKCK--------------------------------PRSHFQAIQL
        W MLGVAGM                                      ++ Y E R+ +                                P +    ++ 
Subjt:  WEMLGVAGMK-------------------------------------MARYKEPRKCK--------------------------------PRSHFQAIQL

Query:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG
          K  + GRLAM AFLGFI+QHNVTGKGPFDN LQHISDPWHNTIVQTL G
Subjt:  ATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG

Arabidopsis top hitse value%identityAlignment
AT1G45474.1 photosystem I light harvesting complex gene 51.0e-2734.8Show/hide
Query:  RALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGM----------------------
        R  SVK     +  +  VE  +  WLPGL  P YLDG+L GD GFDPLGL EDP++L+WYVQAELV+ R+ MLGVAG+                      
Subjt:  RALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGM----------------------

Query:  ----------------------KMARYKE----PRKCKPRSHFQAIQLA------------------------------TKRFSTGRLAMFAFLGFIVQH
                              +  RY +      + K  S F  ++ A                               K    GRLAM A LGF VQ 
Subjt:  ----------------------KMARYKE----PRKCKPRSHFQAIQLA------------------------------TKRFSTGRLAMFAFLGFIVQH

Query:  NVTGKGPFDNFLQHISDPWHNTIVQTL
        +VT  GP DN ++H+S+PWH TI+QTL
Subjt:  NVTGKGPFDNFLQHISDPWHNTIVQTL

AT1G45474.2 photosystem I light harvesting complex gene 51.0e-2734.8Show/hide
Query:  RALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGM----------------------
        R  SVK     +  +  VE  +  WLPGL  P YLDG+L GD GFDPLGL EDP++L+WYVQAELV+ R+ MLGVAG+                      
Subjt:  RALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGM----------------------

Query:  ----------------------KMARYKE----PRKCKPRSHFQAIQLA------------------------------TKRFSTGRLAMFAFLGFIVQH
                              +  RY +      + K  S F  ++ A                               K    GRLAM A LGF VQ 
Subjt:  ----------------------KMARYKE----PRKCKPRSHFQAIQLA------------------------------TKRFSTGRLAMFAFLGFIVQH

Query:  NVTGKGPFDNFLQHISDPWHNTIVQTL
        +VT  GP DN ++H+S+PWH TI+QTL
Subjt:  NVTGKGPFDNFLQHISDPWHNTIVQTL

AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A44.8e-5750.2Show/hide
Query:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSV-LNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNG
        M TVTT ASA +FRPC S+ RFL+GSSG+ NR LS     SS   +SFKVEAKKGEWLPGL SP YL GSL GDNGFDPLGLAEDP+NL+W+VQAELVNG
Subjt:  MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSV-LNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNG

Query:  RWEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------PRSHFQAIQLA----
        RW MLGVAGM +                                       Y E R+ +                          P   F  +  A    
Subjt:  RWEMLGVAGMKMA-------------------------------------RYKEPRKCK--------------------------PRSHFQAIQLA----

Query:  --TKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQT
           K  + GRLAM AFLGF+VQHNVTGKGPF+N LQH+SDPWHNTIVQT
Subjt:  --TKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQT

AT3G54890.1 photosystem I light harvesting complex gene 12.9e-2232.88Show/hide
Query:  LSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGM-------------
        LS S  KF  A    P   +V    ++ A    W+PG P PAYLDGS PGD GFDPLGL E P NL  Y ++EL++ RW ML V G+             
Subjt:  LSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGM-------------

Query:  ----------------------------------------KMARYKEPRKCK-PRSHFQAI----------QLATKRFSTGRLAMFAFLGFIVQHNV-TG
                                                + +  K+P K K P   F  +          +L  K    GRLA+ AF+GF VQ +   G
Subjt:  ----------------------------------------KMARYKEPRKCK-PRSHFQAI----------QLATKRFSTGRLAMFAFLGFIVQHNV-TG

Query:  KGPFDNFLQHISDPWHNTI
         GP +N   H++DPWHN I
Subjt:  KGPFDNFLQHISDPWHNTI

AT3G54890.2 photosystem I light harvesting complex gene 14.1e-2437.3Show/hide
Query:  LSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGMKMAR---YKEPRK
        LS S  KF  A    P   +V    ++ A    W+PG P PAYLDGS PGD GFDPLGL E P NL  Y ++EL++ RW ML V G+ +     Y    K
Subjt:  LSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGMKMAR---YKEPRK

Query:  CKPRSHFQ---------------------------AIQLATKRFSTGRLAMFAFLGFIVQHNV-TGKGPFDNFLQHISDPWHNTI
         +  +                              A +L  K    GRLA+ AF+GF VQ +   G GP +N   H++DPWHN I
Subjt:  CKPRSHFQ---------------------------AIQLATKRFSTGRLAMFAFLGFIVQHNV-TGKGPFDNFLQHISDPWHNTI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAACTGTCACGACCCAGGCTTCGGCCATTGTCTTCCGGCCATGCAAGTCGAGATCGAGGTTTCTCTCGGGGTCTTCAGGAAAGTTTAACAGAGCTTTGTCTGTTAA
GCCAACAACTTCTTCAGTTCTTAATTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCAGGTTTGCCATCCCCAGCTTACCTTGATGGAAGTCTGCCAGGCGACA
ATGGGTTTGATCCTCTGGGACTTGCAGAGGATCCTAAAAACTTGAGGTGGTATGTGCAAGCCGAGCTTGTGAATGGCCGATGGGAGATGCTCGGAGTTGCAGGTATGAAG
ATGGCAAGATATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAACGATTTTCTACAGGAAGACTGGCAATGTTTGCATTCTT
GGGATTCATTGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCATGGCACAACACTATAGTTCAAACACTAAGGGGGTAG
mRNA sequenceShow/hide mRNA sequence
ACCCTTGATATCCATCAAACAAATCAACACCATAAATCTTAAATGCCATTACAAAGCCATGAACAAAATACACTTCTTGAACTCAAACCAAAACCAGGTTTTCTTCTACC
ATCATTCTTGCTCAAAAAATGGTAACTGTCACGACCCAGGCTTCGGCCATTGTCTTCCGGCCATGCAAGTCGAGATCGAGGTTTCTCTCGGGGTCTTCAGGAAAGTTTAA
CAGAGCTTTGTCTGTTAAGCCAACAACTTCTTCAGTTCTTAATTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCAGGTTTGCCATCCCCAGCTTACCTTGATG
GAAGTCTGCCAGGCGACAATGGGTTTGATCCTCTGGGACTTGCAGAGGATCCTAAAAACTTGAGGTGGTATGTGCAAGCCGAGCTTGTGAATGGCCGATGGGAGATGCTC
GGAGTTGCAGGTATGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAACGATTTTCTACAGGAAGACT
GGCAATGTTTGCATTCTTGGGATTCATTGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCATGGCACAACACTATAGTTC
AAACACTAAGGGGGTAG
Protein sequenceShow/hide protein sequence
MVTVTTQASAIVFRPCKSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPKNLRWYVQAELVNGRWEMLGVAGMK
MARYKEPRKCKPRSHFQAIQLATKRFSTGRLAMFAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG