; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC01G016680 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G016680
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRRM domain-containing protein
Genome locationCicolChr01:29370814..29374279
RNA-Seq ExpressionCcUC01G016680
SyntenyCcUC01G016680
Gene Ontology termsGO:0016554 - cytidine to uridine editing (biological process)
GO:1900871 - chloroplast mRNA modification (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036062.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa]1.3e-6284.87Show/hide
Query:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE
        MTAGL F +TAAP P FQ QTTHH NIRSTETHMR QS QS+L YSSTPL FFS RKT+SIS+SPLFSVAC SSS  PSPRRY+PSTRLYVSGLSFRTTE
Subjt:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE

Query:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKS
        ESLRNAFKSFGQLVEVNLVMD+VANRPRGFAFLRYA+EEES+KAIEGMHGK+
Subjt:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKS

XP_008439477.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis melo]4.8e-6280.49Show/hide
Query:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE
        MTAGL F +TAAP P F  QTTHH NIRSTETHMR QS QS+L YSSTPL FFS RKT+SIS+SPLFSVAC SSS  PSPRRY+PSTRLYVSGLSFRTTE
Subjt:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE

Query:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKSKCISGAAFSVEI
        ESLRNAFKSFGQLVEVNLVMD+VANRPRGFAFLRYA+EEES+KAIEGMHG  K + G    VEI
Subjt:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKSKCISGAAFSVEI

XP_038895072.1 organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida]5.0e-6782.63Show/hide
Query:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE
        MTAGLPF + AAP P FQFQ THH NIRSTETH RI SI+SQL YSSTPL FFSVRKT SISDSPLFS+AC SSSP PSPRRYTPSTRLYVSGLSFRTTE
Subjt:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE

Query:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKSKCISGAAFSVEILSS
        ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEES+KAIEGMHG  K + G    VE+  S
Subjt:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKSKCISGAAFSVEILSS

XP_038895073.1 organelle RRM domain-containing protein 6, chloroplastic isoform X2 [Benincasa hispida]1.9e-6688.74Show/hide
Query:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE
        MTAGLPF + AAP P FQFQ THH NIRSTETH RI SI+SQL YSSTPL FFSVRKT SISDSPLFS+AC SSSP PSPRRYTPSTRLYVSGLSFRTTE
Subjt:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE

Query:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK
        ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEES+KAIEGMHGK
Subjt:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK

XP_038895074.1 organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida]6.5e-6788.82Show/hide
Query:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE
        MTAGLPF + AAP P FQFQ THH NIRSTETH RI SI+SQL YSSTPL FFSVRKT SISDSPLFS+AC SSSP PSPRRYTPSTRLYVSGLSFRTTE
Subjt:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE

Query:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKS
        ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEES+KAIEGMHGKS
Subjt:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKS

TrEMBL top hitse value%identityAlignment
A0A0A0LQB8 RRM domain-containing protein1.3e-6076.92Show/hide
Query:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSP--PPSPRRYTPSTRLYVSGLSFRT
        MTAGL F +TAAP P FQ QTTHH +I STET MRI+SIQS+L YSSTPL FFS RKT+SISDS LFSVAC SSSP    SPRRYTPSTRLY+SGLSFRT
Subjt:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSP--PPSPRRYTPSTRLYVSGLSFRT

Query:  TEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKSKCISGAAFSVEILSS
        TEESLRNAFKSFGQLVEVNLVMD++ANRPRGFAFLRYA+EEES+KAIEGMHG  K + G    VE+  S
Subjt:  TEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKSKCISGAAFSVEILSS

A0A1S3AYF6 glycine-rich RNA-binding protein 4, mitochondrial-like isoform X12.3e-6280.49Show/hide
Query:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE
        MTAGL F +TAAP P F  QTTHH NIRSTETHMR QS QS+L YSSTPL FFS RKT+SIS+SPLFSVAC SSS  PSPRRY+PSTRLYVSGLSFRTTE
Subjt:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE

Query:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKSKCISGAAFSVEI
        ESLRNAFKSFGQLVEVNLVMD+VANRPRGFAFLRYA+EEES+KAIEGMHG  K + G    VEI
Subjt:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKSKCISGAAFSVEI

A0A1S4E0R2 glycine-rich RNA-binding protein 4, mitochondrial-like isoform X25.2e-6284.77Show/hide
Query:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE
        MTAGL F +TAAP P F  QTTHH NIRSTETHMR QS QS+L YSSTPL FFS RKT+SIS+SPLFSVAC SSS  PSPRRY+PSTRLYVSGLSFRTTE
Subjt:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE

Query:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK
        ESLRNAFKSFGQLVEVNLVMD+VANRPRGFAFLRYA+EEES+KAIEGMHGK
Subjt:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK

A0A5A7SXY0 Glycine-rich RNA-binding protein 46.2e-6384.87Show/hide
Query:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE
        MTAGL F +TAAP P FQ QTTHH NIRSTETHMR QS QS+L YSSTPL FFS RKT+SIS+SPLFSVAC SSS  PSPRRY+PSTRLYVSGLSFRTTE
Subjt:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE

Query:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKS
        ESLRNAFKSFGQLVEVNLVMD+VANRPRGFAFLRYA+EEES+KAIEGMHGK+
Subjt:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKS

A0A5D3BIP7 Glycine-rich RNA-binding protein 44.0e-6284.21Show/hide
Query:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE
        MTAGL F +TAAP P F  QTTHH NIRSTETHMR QS QS+L YSSTPL FFS RKT+SIS+SPLFSVAC SSS  PSPRRY+PSTRLYVSGLSFRTTE
Subjt:  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTE

Query:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKS
        ESLRNAFKSFGQLVEVNLVMD+VANRPRGFAFLRYA+EEES+KAIEGMHGK+
Subjt:  ESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKS

SwissProt top hitse value%identityAlignment
C0HFE5 Organelle RRM domain-containing protein 1, chloroplastic9.6e-1350Show/hide
Query:  RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK
        RL+V+GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+AF+ Y TEE    A++ M+G+
Subjt:  RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK

Q6YWP9 Organelle RRM domain-containing protein 1, chloroplastic3.3e-1351.56Show/hide
Query:  RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK
        RL+V+GLSF T+E++LR AF+ FG+LVEV ++MDK++ R +G+AF+ Y TEE    A++ M+G+
Subjt:  RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK

Q8L440 Organelle RRM domain-containing protein 1, chloroplastic1.5e-1346.25Show/hide
Query:  NSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK
        +S SPP        + +L+++GLSF T+E++LR AF+ FG+LVEV ++MDK++ R +G+AFL Y TEE +  A++ M+GK
Subjt:  NSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial1.5e-1349.37Show/hide
Query:  SSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK
        + S  P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F+RYAT E+S K I GM GK
Subjt:  SSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic1.9e-2458.16Show/hide
Query:  SVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK
        S R+ R I    + S     SS  P      P T+LYVSGLSFRTTE++LR+ F+ FG L+ +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGK
Subjt:  SVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-2558.16Show/hide
Query:  SVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK
        S R+ R I    + S     SS  P      P T+LYVSGLSFRTTE++LR+ F+ FG L+ +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGK
Subjt:  SVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK

AT2G27330.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.4e-1241.67Show/hide
Query:  RRYTP-------STRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAI
        R +TP       S+ L+V G+SF +TEE+L  AF  +GQ+++V+++MDK+  RP+GFA++ ++++EE+ KA+
Subjt:  RRYTP-------STRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAI

AT3G20930.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-1446.25Show/hide
Query:  NSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK
        +S SPP        + +L+++GLSF T+E++LR AF+ FG+LVEV ++MDK++ R +G+AFL Y TEE +  A++ M+GK
Subjt:  NSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK

AT4G13860.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.4e-1238.64Show/hide
Query:  STRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKSKCISGAAFSVEILSSGIGQVD
        +TR+YV  LS  TT++ LR AF  +G +V+  ++ D+  +R RGF F+ Y++  E+  A+ GM GK   ++G   SV++   GIG +D
Subjt:  STRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKSKCISGAAFSVEILSSGIGQVD

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-1449.37Show/hide
Query:  SSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK
        + S  P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F+RYAT E+S K I GM GK
Subjt:  SSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGCCGGATTGCCATTCGCAATCACAGCTGCTCCAAATCCGCTCTTTCAGTTTCAGACTACTCATCATTACAATATCCGTTCAACCGAGACGCATATGCGA
ATTCAAAGCATTCAATCACAATTGCCTTACAGTTCTACGCCACTCTCCTTCTTCTCCGTGAGGAAGACTCGCTCAATTTCAGATTCACCGCTCTTTTCAGTGGCA
TGTAACTCTTCTTCACCTCCGCCTTCTCCCAGAAGATACACGCCTTCAACCAGGCTTTACGTCAGTGGACTTTCATTTCGGACCACTGAAGAGAGCTTGCGAAAT
GCTTTTAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTCGCTTTCCTCCGTTATGCTACTGAAGAGGAA
TCTCGAAAAGCTATCGAGGGAATGCACGGCAAGTCAAAGTGTATTTCAGGAGCAGCGTTTTCTGTTGAAATTTTATCATCGGGGATTGGTCAAGTTGATCACCTA
ACCGAATATGAACTTCTGAGACATGAGCTATGGTCAAAGATCGCAGGTTGA
mRNA sequenceShow/hide mRNA sequence
TACGGGGTCGTTTTAGAGGTCTGGACTCAGAAATATGGGGTACGGTCCCCAATATTCCGGATTGCGAATTCCTCAAATTGTTGCAGCGGCTTTCGGGTGAAACGC
CGGAGAAGACGAAAATGACCGCCGGATTGCCATTCGCAATCACAGCTGCTCCAAATCCGCTCTTTCAGTTTCAGACTACTCATCATTACAATATCCGTTCAACCG
AGACGCATATGCGAATTCAAAGCATTCAATCACAATTGCCTTACAGTTCTACGCCACTCTCCTTCTTCTCCGTGAGGAAGACTCGCTCAATTTCAGATTCACCGC
TCTTTTCAGTGGCATGTAACTCTTCTTCACCTCCGCCTTCTCCCAGAAGATACACGCCTTCAACCAGGCTTTACGTCAGTGGACTTTCATTTCGGACCACTGAAG
AGAGCTTGCGAAATGCTTTTAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTCGCTTTCCTCCGTTATG
CTACTGAAGAGGAATCTCGAAAAGCTATCGAGGGAATGCACGGCAAGTCAAAGTGTATTTCAGGAGCAGCGTTTTCTGTTGAAATTTTATCATCGGGGATTGGTC
AAGTTGATCACCTAACCGAATATGAACTTCTGAGACATGAGCTATGGTCAAAGATCGCAGGTTGA
Protein sequenceShow/hide protein sequence
MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLPYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRN
AFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKSKCISGAAFSVEILSSGIGQVDHLTEYELLRHELWSKIAG