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CcUC01G016730 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC01G016730
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionPectate lyase family protein
Genome locationCicolChr01:29386379..29387227
RNA-Seq ExpressionCcUC01G016730
SyntenyCcUC01G016730
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACR34321.1 unknown [Zea mays]1.8e-0829.82Show/hide
Query:  DSHVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPHFGG---------------------------------MVDDKAVDD
        D H  +  + V  A+++++V++ +  VG+GD  G   DV + +LA  +  VV PH GG                                 +VD   VDD
Subjt:  DSHVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPHFGG---------------------------------MVDDKAVDD

Query:  DVGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPDFGFDHCGAVSERTWAWVYR-VVARVRDLVAYEISSHVVGHFSSETNRANGEL
        DV      + R  GD    A+A++G  AA+++ LL+ + H   E DP    D   A  ER  A V+  VV  VR  V  E++    G  + E   A  + 
Subjt:  DVGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPDFGFDHCGAVSERTWAWVYR-VVARVRDLVAYEISSHVVGHFSSETNRANGEL

Query:  LPVSSPVWIGSPASVNGV
        LPV  PV    PA V+ V
Subjt:  LPVSSPVWIGSPASVNGV

BBG96110.1 Exonuclease family protein [Prunus dulcis]7.0e-0834.15Show/hide
Query:  LATVQRVVVNPHFGGMVDDKAVDDDVGGS------EHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPDFGFDHCGAVSERTWAWVYRVVA
        LAT++   +   F     DK  +  +G S      +  Q  +  +V+   S+I+G EA NEK  ++ N+H+  E DP F FDH   +S+ +   V R V 
Subjt:  LATVQRVVVNPHFGGMVDDKAVDDDVGGS------EHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPDFGFDHCGAVSERTWAWVYRVVA

Query:  RVRDLVAYEISSHVVGHFSSETN
         VRDL+ Y+ISS+VV H   +++
Subjt:  RVRDLVAYEISSHVVGHFSSETN

KAF7820188.1 hypothetical protein G2W53_025643 [Senna tora]4.0e-1132.83Show/hide
Query:  HVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPHF-----------------------------GGM--VDDKAVDDDVGG
        H  I  + V+V +K++LV++ +  + N D   P   + QP+ A  QR VV+P                               GG+  VD   VDDDVG 
Subjt:  HVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPHF-----------------------------GGM--VDDKAVDDDVGG

Query:  SEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPDFG-FDHCGAVSERTWAWVYRV-VARVRDLVAYEISSHVVGHFSSETNRANGELL
            +  V GDVD GA+A+DG EA  ++ +LE + H+  E DP+ G  DH   V+E +W  V  V V  V D V  ++++      ++E N A GELL
Subjt:  SEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPDFG-FDHCGAVSERTWAWVYRV-VARVRDLVAYEISSHVVGHFSSETNRANGELL

KYP69131.1 hypothetical protein KK1_008314, partial [Cajanus cajan]1.2e-1029.02Show/hide
Query:  GDSHVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPHF-------------------------------GGMVDDKAVDDD
        G+ H P+  + ++V+KK+NLV++ +  VG+GD  GP   V Q + A  +  +V+P                                 G +V    VDDD
Subjt:  GDSHVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPHF-------------------------------GGMVDDKAVDDD

Query:  VGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPD-FGFDHCGAVSERTWAWVYRV-VARVRDLVAYEISSHVVGHFSSETNRANGEL
        V         VP  +  GA+ +   EA  ++ +L+ + H+  E DP     DH   V ER    V RV V  VR  V  ++++      + E + A  +L
Subjt:  VGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPD-FGFDHCGAVSERTWAWVYRV-VARVRDLVAYEISSHVVGHFSSETNRANGEL

Query:  LPVSSPVWIGSPASVNGVHVQAMG
        LPV  PV +  PA V+GV  Q  G
Subjt:  LPVSSPVWIGSPASVNGVHVQAMG

VVV80023.1 unnamed protein product, partial [Nymphaea colorata]1.6e-0734.53Show/hide
Query:  PHFG-----GMVDDKAVDDDVGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPD-FGFDHCGAVSERTWAWVYRVVARVRDLVAYEI
        PH G      ++D  AVDDDVG           DVD GA+ +DG EA +++ LLE++ H+  E DP  F  DHC  V+E     V+ V+ RV   V + +
Subjt:  PHFG-----GMVDDKAVDDDVGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPD-FGFDHCGAVSERTWAWVYRVVARVRDLVAYEI

Query:  SSHVVGHFS--SETNRANGELLPVSSPVWIGSPASVNGV
           +   +    E N A  + L V+ PV +  PA ++G+
Subjt:  SSHVVGHFS--SETNRANGELLPVSSPVWIGSPASVNGV

TrEMBL top hitse value%identityAlignment
A0A022RNF3 Uncharacterized protein1.1e-0628.77Show/hide
Query:  YGDSHVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPH----------------------------FGGM---VDDKAVDD
        Y   H  I ++ V V+++++L+++ + +V      GP   V QP+LA  QR VV+P+                            F G+   VD   VDD
Subjt:  YGDSHVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPH----------------------------FGGM---VDDKAVDD

Query:  DVGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPDFGFDHCGAVSERTWAWVYRV-VARVR-DLVAYEISSHVVGHFSSETNRANGE
         V           GDVD GA+A++G E   ++ L E + H+  E DP++       V+E +   V  + V  VR  +VA  + +  V    +E + A GE
Subjt:  DVGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPDFGFDHCGAVSERTWAWVYRV-VARVR-DLVAYEISSHVVGHFSSETNRANGE

Query:  LLPVSSPVWIGSPASVNGV
         L V +PV +  PA V+ V
Subjt:  LLPVSSPVWIGSPASVNGV

A0A151TQ30 Uncharacterized protein (Fragment)5.6e-1129.02Show/hide
Query:  GDSHVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPHF-------------------------------GGMVDDKAVDDD
        G+ H P+  + ++V+KK+NLV++ +  VG+GD  GP   V Q + A  +  +V+P                                 G +V    VDDD
Subjt:  GDSHVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPHF-------------------------------GGMVDDKAVDDD

Query:  VGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPD-FGFDHCGAVSERTWAWVYRV-VARVRDLVAYEISSHVVGHFSSETNRANGEL
        V         VP  +  GA+ +   EA  ++ +L+ + H+  E DP     DH   V ER    V RV V  VR  V  ++++      + E + A  +L
Subjt:  VGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPD-FGFDHCGAVSERTWAWVYRV-VARVRDLVAYEISSHVVGHFSSETNRANGEL

Query:  LPVSSPVWIGSPASVNGVHVQAMG
        LPV  PV +  PA V+GV  Q  G
Subjt:  LPVSSPVWIGSPASVNGVHVQAMG

A0A4Y1QW81 Exonuclease family protein3.4e-0834.15Show/hide
Query:  LATVQRVVVNPHFGGMVDDKAVDDDVGGS------EHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPDFGFDHCGAVSERTWAWVYRVVA
        LAT++   +   F     DK  +  +G S      +  Q  +  +V+   S+I+G EA NEK  ++ N+H+  E DP F FDH   +S+ +   V R V 
Subjt:  LATVQRVVVNPHFGGMVDDKAVDDDVGGS------EHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPDFGFDHCGAVSERTWAWVYRVVA

Query:  RVRDLVAYEISSHVVGHFSSETN
         VRDL+ Y+ISS+VV H   +++
Subjt:  RVRDLVAYEISSHVVGHFSSETN

A0A5K0YTH9 Uncharacterized protein (Fragment)7.6e-0834.53Show/hide
Query:  PHFG-----GMVDDKAVDDDVGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPD-FGFDHCGAVSERTWAWVYRVVARVRDLVAYEI
        PH G      ++D  AVDDDVG           DVD GA+ +DG EA +++ LLE++ H+  E DP  F  DHC  V+E     V+ V+ RV   V + +
Subjt:  PHFG-----GMVDDKAVDDDVGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPD-FGFDHCGAVSERTWAWVYRVVARVRDLVAYEI

Query:  SSHVVGHFS--SETNRANGELLPVSSPVWIGSPASVNGV
           +   +    E N A  + L V+ PV +  PA ++G+
Subjt:  SSHVVGHFS--SETNRANGELLPVSSPVWIGSPASVNGV

C4IZH1 Uncharacterized protein8.9e-0929.82Show/hide
Query:  DSHVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPHFGG---------------------------------MVDDKAVDD
        D H  +  + V  A+++++V++ +  VG+GD  G   DV + +LA  +  VV PH GG                                 +VD   VDD
Subjt:  DSHVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPHFGG---------------------------------MVDDKAVDD

Query:  DVGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPDFGFDHCGAVSERTWAWVYR-VVARVRDLVAYEISSHVVGHFSSETNRANGEL
        DV      + R  GD    A+A++G  AA+++ LL+ + H   E DP    D   A  ER  A V+  VV  VR  V  E++    G  + E   A  + 
Subjt:  DVGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNMHIFWECDPDFGFDHCGAVSERTWAWVYR-VVARVRDLVAYEISSHVVGHFSSETNRANGEL

Query:  LPVSSPVWIGSPASVNGV
        LPV  PV    PA V+ V
Subjt:  LPVSSPVWIGSPASVNGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTACGGTGACTCTCATGTTCCGATCTCGAACATAACCGTCATCGTGGCCAAGAAGAATAACCTTGTCTTGATCTCGAAACCAATTGTTGGAAATGGTGATGTCAG
TGGACCCACGGGTGACGTCAAGCAACCCATCCTCGCAACGGTACAGCGTGTTGTGGTCAATCCACACTTTGGAGGCATGGTGGATGATAAGGCCGTGGATGATGATGTTG
GTGGCTCTGAACACCATCAAACACGCGTTCCCGGTGATGTGGACGGTGGCGCCTCGGCCATCGATGGCGGTGAAGCTGCTAATGAGAAGCGGCTTCTTGAGCATAATATG
CATATCTTTTGGGAATGTGATCCAGACTTTGGGTTTGATCATTGTGGCGCCGTATCTGAGCGTACCTGGGCGTGGGTTTATAGGGTCGTCGCTAGGGTCCGTGACTTGGT
AGCGTATGAGATTTCTTCCCATGTTGTTGGTCATTTTTCCAGCGAAACCAACCGAGCAAACGGCGAGTTGTTGCCTGTTTCTTCTCCAGTATGGATTGGATCTCCAGCAT
CTGTCAATGGCGTTCATGTTCAAGCCATGGGCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTACGGTGACTCTCATGTTCCGATCTCGAACATAACCGTCATCGTGGCCAAGAAGAATAACCTTGTCTTGATCTCGAAACCAATTGTTGGAAATGGTGATGTCAG
TGGACCCACGGGTGACGTCAAGCAACCCATCCTCGCAACGGTACAGCGTGTTGTGGTCAATCCACACTTTGGAGGCATGGTGGATGATAAGGCCGTGGATGATGATGTTG
GTGGCTCTGAACACCATCAAACACGCGTTCCCGGTGATGTGGACGGTGGCGCCTCGGCCATCGATGGCGGTGAAGCTGCTAATGAGAAGCGGCTTCTTGAGCATAATATG
CATATCTTTTGGGAATGTGATCCAGACTTTGGGTTTGATCATTGTGGCGCCGTATCTGAGCGTACCTGGGCGTGGGTTTATAGGGTCGTCGCTAGGGTCCGTGACTTGGT
AGCGTATGAGATTTCTTCCCATGTTGTTGGTCATTTTTCCAGCGAAACCAACCGAGCAAACGGCGAGTTGTTGCCTGTTTCTTCTCCAGTATGGATTGGATCTCCAGCAT
CTGTCAATGGCGTTCATGTTCAAGCCATGGGCTTCTGA
Protein sequenceShow/hide protein sequence
MDYGDSHVPISNITVIVAKKNNLVLISKPIVGNGDVSGPTGDVKQPILATVQRVVVNPHFGGMVDDKAVDDDVGGSEHHQTRVPGDVDGGASAIDGGEAANEKRLLEHNM
HIFWECDPDFGFDHCGAVSERTWAWVYRVVARVRDLVAYEISSHVVGHFSSETNRANGELLPVSSPVWIGSPASVNGVHVQAMGF