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CcUC02G017130 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G017130
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTrafficking protein particle complex subunit 2-like
Genome locationCicolChr02:75452..75969
RNA-Seq ExpressionCcUC02G017130
SyntenyCcUC02G017130
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsIPR006722 - Trafficking protein particle complex subunit 2
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7034830.1 Trafficking protein particle complex subunit 2B [Cucurbita argyrosperma subsp. argyrosperma]3.9e-3498.73Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL

KGN62236.1 hypothetical protein Csa_016951 [Cucumis sativus]1.4e-34100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
        MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL

XP_004147330.1 transport protein particle 20 kDa subunit [Cucumis sativus]8.8e-34100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

XP_022970900.1 trafficking protein particle complex subunit 2 isoform X1 [Cucurbita maxima]2.6e-3398.7Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

XP_038900562.1 transport protein particle 20 kDa subunit [Benincasa hispida]8.8e-34100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

TrEMBL top hitse value%identityAlignment
A0A0A0LQF1 Uncharacterized protein6.5e-35100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
        MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL

A0A6J1G7K7 trafficking protein particle complex subunit 2 isoform X11.2e-3398.7Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

A0A6J1G7X4 transport protein particle 20 kDa subunit isoform X21.2e-3398.7Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

A0A6J1I1U1 transport protein particle 20 kDa subunit isoform X21.2e-3398.7Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

A0A6J1I468 trafficking protein particle complex subunit 2 isoform X11.2e-3398.7Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

SwissProt top hitse value%identityAlignment
E2QV03 Trafficking protein particle complex subunit 23.4e-1241.98Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH+
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI

F1SRI0 Trafficking protein particle complex subunit 23.4e-1241.98Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH+
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI

P0DI81 Trafficking protein particle complex subunit 23.4e-1241.98Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH+
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI

P0DI82 Trafficking protein particle complex subunit 2B3.4e-1241.98Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH+
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI

Q3T0F2 Trafficking protein particle complex subunit 23.4e-1241.98Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH+
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI

Arabidopsis top hitse value%identityAlignment
AT1G80500.1 SNARE-like superfamily protein1.4e-3489.61Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MA TACFIIV RN+IPIYEAEVGSA KRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+VDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCTATCTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTT
TATATTGCATGCGTCCCTCGACATTGTTCAAGACCTGGCATGGACAACTAGTGCTATGTTCTTGAAAGCAGTCGATAGGTTCAATGACTTGGTCGTGTCTGTATATGTAA
CCGCCGGTCATATCCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCTATCTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTT
TATATTGCATGCGTCCCTCGACATTGTTCAAGACCTGGCATGGACAACTAGTGCTATGTTCTTGAAAGCAGTCGATAGGTTCAATGACTTGGTCGTGTCTGTATATGTAA
CCGCCGGTCATATCCTTTAA
Protein sequenceShow/hide protein sequence
MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL