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CcUC02G017510 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G017510
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionMADS-box protein SOC1-like
Genome locationCicolChr02:403171..404109
RNA-Seq ExpressionCcUC02G017510
SyntenyCcUC02G017510
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571340.1 MADS-box transcription factor PHERES 2, partial [Cucurbita argyrosperma subsp. sororia]5.8e-1064.81Show/hide
Query:  VSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK
        V V  PN NDQSP++L+TWP CRE+     ASYK NCLHKRARK F LL+FFS+
Subjt:  VSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK

XP_008460878.1 PREDICTED: MADS-box protein SOC1-like [Cucumis melo]2.0e-1066.67Show/hide
Query:  VLVSVTSPNQ-NDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK
        V V V  PNQ NDQSPLQLHTWP C ++     ASYK NCLHKRARK FGL++FFS+
Subjt:  VLVSVTSPNQ-NDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK

XP_022973845.1 agamous-like MADS-box protein AGL103 [Cucurbita maxima]3.4e-1064.29Show/hide
Query:  VLVSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK
        V V V  PN NDQSP +L+TWP CRE+     ASYK NCLHKRARK F LL+FFS+
Subjt:  VLVSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK

XP_023512369.1 agamous-like MADS-box protein AGL103 [Cucurbita pepo subsp. pepo]5.8e-1064.81Show/hide
Query:  VSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK
        V V  PN NDQSP++L+TWP CRE+     ASYK NCLHKRARK F LL+FFS+
Subjt:  VSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK

XP_038890378.1 floral homeotic protein FBP1-like [Benincasa hispida]2.3e-1167.86Show/hide
Query:  VLVSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK
        V V V  PNQNDQSP Q+HTWP CRED     ASYK NCLHKRA K  GLL+FFS+
Subjt:  VLVSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK

TrEMBL top hitse value%identityAlignment
A0A1S3CDG6 MADS-box protein SOC1-like9.6e-1166.67Show/hide
Query:  VLVSVTSPNQ-NDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK
        V V V  PNQ NDQSPLQLHTWP C ++     ASYK NCLHKRARK FGL++FFS+
Subjt:  VLVSVTSPNQ-NDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK

A0A5D3BUZ8 MADS-box protein SOC1-like9.6e-1166.67Show/hide
Query:  VLVSVTSPNQ-NDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK
        V V V  PNQ NDQSPLQLHTWP C ++     ASYK NCLHKRARK FGL++FFS+
Subjt:  VLVSVTSPNQ-NDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK

A0A6J1D9H6 agamous-like MADS-box protein AGL173.1e-0959.26Show/hide
Query:  VSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK
        V +  PNQND+SP+++HTWP  R+D     ASY+ NCLHKRARK F LL+FFS+
Subjt:  VSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK

A0A6J1EVI5 agamous-like MADS-box protein AGL1032.8e-1064.81Show/hide
Query:  VSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK
        V V  PN NDQSP++L+TWP CRE+     ASYK NCLHKRARK F LL+FFS+
Subjt:  VSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK

A0A6J1ICD8 agamous-like MADS-box protein AGL1031.6e-1064.29Show/hide
Query:  VLVSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK
        V V V  PN NDQSP +L+TWP CRE+     ASYK NCLHKRARK F LL+FFS+
Subjt:  VLVSVTSPNQNDQSPLQLHTWPSCRED-----ASYKPNCLHKRARKTFGLLNFFSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGTACTTGTGTCTGTTACGAGCCCTAACCAAAATGACCAATCTCCCCTCCAACTTCACACGTGGCCATCGTGTCGGGAAGACGCATCTTACAAGCCTAATTGTCT
CCACAAACGTGCTCGCAAGACATTCGGTCTCCTCAACTTCTTCTCCAAACCGACATGTCGTCCAAGCTTCACAAGGATGCGGTTGAAGCCAAGTAATACAATTAAGAACA
CGTTTGGATTGATTATGTTTATTCAATCTCGTGGTTTATTATTATAA
mRNA sequenceShow/hide mRNA sequence
AATGACCTTTCTCACGCGTCTTTCCCTCTCTCTCAATCTCTAGCCTCCGCCGGTCACCGTCTCTCTCCGCCATCGTTTCATCCTCGCCGCCGAACGCTGCCGGCAATCTT
CCCCTTCATCTGTTTCTCTCTCTTCTTTCCTTGTCCCTCTCTCTCTCTCTCTCTCTCTCTCTAAGATTTTCATAATTTTTTTAATAAATAAATATAGAGATTATAAGAAT
TTATTAGCAACAGAAAAAAAAAAAAAAAAAAAAAATTACCTTCGATTCCGTAATTCTTACCATTCTCTATCTATTCTCTTCTTCTTTCCTTTTCAGCCAAGAAATCTATT
CTGTCCACAGCTCCGCCGCACCACCGTCGTACCACCACCGCGAACTGGCTTTTAAAACTCTAGTGATGGGGAGAGGAAAGTCGAACATGAAACTGATCGGTAACGAGAAA
TCTGGAAAGACGAGTTTGTATAAGCGGAAAGCAAGTCTGTTACGAGCTCTCTACACTGTGTGATGTTCGTACTTGTGTCTGTTACGAGCCCTAACCAAAATGACCAATCT
CCCCTCCAACTTCACACGTGGCCATCGTGTCGGGAAGACGCATCTTACAAGCCTAATTGTCTCCACAAACGTGCTCGCAAGACATTCGGTCTCCTCAACTTCTTCTCCAA
ACCGACATGTCGTCCAAGCTTCACAAGGATGCGGTTGAAGCCAAGTAATACAATTAAGAACACGTTTGGATTGATTATGTTTATTCAATCTCGTGGTTTATTATTATAAT
ATTGTTAATGTTAATTAGGTTCCAAAAATGGGATGAACGTACAGGCTATCTATTAGAAGATCAATTACGGATTTTTTTTAAGTGAAATACTAAAACA
Protein sequenceShow/hide protein sequence
MFVLVSVTSPNQNDQSPLQLHTWPSCREDASYKPNCLHKRARKTFGLLNFFSKPTCRPSFTRMRLKPSNTIKNTFGLIMFIQSRGLLL