; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G017810 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G017810
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRibosome assembly factor mrt4
Genome locationCicolChr02:637448..638964
RNA-Seq ExpressionCcUC02G017810
SyntenyCcUC02G017810
Gene Ontology termsGO:0042254 - ribosome biogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0043232 - intracellular non-membrane-bounded organelle (cellular component)
InterPro domainsIPR001790 - Ribosomal protein L10P
IPR043141 - Ribosomal protein L10-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157470.1 mRNA turnover protein 4 homolog [Momordica charantia]1.7e-2173.26Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELREQLKS+SR
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR

XP_022933518.1 mRNA turnover protein 4 homolog [Cucurbita moschata]7.8e-2274.42Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELREQLKSSSR
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR

XP_022969955.1 mRNA turnover protein 4 homolog [Cucurbita maxima]7.8e-2274.42Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELREQLKSSSR
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR

XP_023529350.1 mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo]7.8e-2274.42Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELREQLKSSSR
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR

XP_038902849.1 mRNA turnover protein 4 homolog [Benincasa hispida]1.0e-2174.42Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMV+LIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR

TrEMBL top hitse value%identityAlignment
A0A0A0KNA7 Uncharacterized protein1.5e-1879.03Show/hide
Query:  KTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSRQVVFPGFCII
        K ++KGR+HKKSMV+ IRQ VENYNS+FVFTVENMRNLKFKELREQLKS+SRQV+   FCII
Subjt:  KTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSRQVVFPGFCII

A0A6A4KVW6 Ribosome assembly factor mrt4 (Fragment)8.1e-1761.63Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHK+S+V+ IR+AVE Y+S++VFT ENMRNLKFKE R+QLKSSSR
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR

A0A6J1DT71 Ribosome assembly factor mrt48.4e-2273.26Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELREQLKS+SR
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR

A0A6J1F4Z2 Ribosome assembly factor mrt43.8e-2274.42Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELREQLKSSSR
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR

A0A6J1I1E2 Ribosome assembly factor mrt43.8e-2274.42Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELREQLKSSSR
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR

SwissProt top hitse value%identityAlignment
A4FV84 mRNA turnover protein 4 homolog5.6e-0736.9Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSS
        MPKSKRD+                      V+L+KT KKG E K+++++ +R+ V+ Y  +F+F+V NMRN K K++R   K S
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSS

Q6FJ04 Ribosome assembly factor mrt42.6e-0440Show/hide
Query:  MVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELRE
        +VTL++T KKGRE+K+ + D +R+A++ Y  +FV  ++++R    +E+RE
Subjt:  MVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELRE

Q7S302 Ribosome assembly factor mrt42.0e-0440.82Show/hide
Query:  LSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQL
        L++  KK RE K+ + + IR+ + NY   FVF+++NMRN   K++R++L
Subjt:  LSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQL

Q9D0I8 mRNA turnover protein 4 homolog5.6e-0736.9Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSS
        MPKSKRD+                      V+L+KT KKG E K+++++ +R+ V+ Y  +F+F+V NMRN K K++R   K S
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSS

Q9UKD2 mRNA turnover protein 4 homolog5.6e-0736.9Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSS
        MPKSKRD+                      V+L+KT KKG E K+++++ +R+ V+ Y  +F+F+V NMRN K K++R   K S
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSS

Arabidopsis top hitse value%identityAlignment
AT1G25260.1 Ribosomal protein L10 family protein1.8e-1651.16Show/hide
Query:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHK+ +V+ IR+AVE Y+S++VF+ ENMRN+KFKE R+Q + + +
Subjt:  MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAGTCGAAGCGTGATAGGCCAGGTCCGAACCTAACACAGTACAAGGAGAGATTGTTCAAGGTTCTTGTTGAATATGGGTTAATGGTTACTTTATCAAAA
ACCAAGAAGAAAGGAAGGGAACACAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTTTGTTTTCACTGTTGAGAACATGAGA
AACCTCAAGTTTAAGGAACTCAGGGAGCAGCTGAAGTCATCTAGCAGGCAAGTTGTATTTCCTGGCTTCTGTATTATTTATTTGCTACATCATTTCAAATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAGTCGAAGCGTGATAGGCCAGGTCCGAACCTAACACAGTACAAGGAGAGATTGTTCAAGGTTCTTGTTGAATATGGGTTAATGGTTACTTTATCAAAA
ACCAAGAAGAAAGGAAGGGAACACAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTTTGTTTTCACTGTTGAGAACATGAGA
AACCTCAAGTTTAAGGAACTCAGGGAGCAGCTGAAGTCATCTAGCAGGCAAGTTGTATTTCCTGGCTTCTGTATTATTTATTTGCTACATCATTTCAAATATTGA
Protein sequenceShow/hide protein sequence
MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSRQVVFPGFCIIYLLHHFKY