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CcUC02G018900 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G018900
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionBeta-amylase
Genome locationCicolChr02:1648307..1650200
RNA-Seq ExpressionCcUC02G018900
SyntenyCcUC02G018900
Gene Ontology termsGO:0000272 - polysaccharide catabolic process (biological process)
GO:0016161 - beta-amylase activity (molecular function)
InterPro domainsIPR001554 - Glycoside hydrolase, family 14
IPR017853 - Glycoside hydrolase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022884.1 Beta-amylase [Cucurbita argyrosperma subsp. argyrosperma]2.3e-4956.78Show/hide
Query:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLSNSPDYDEKLIQNYVPVYVTFP----
        M S+TIM SVVCQ+H GIIE I PC GYVQG  KCK Q KK +LNWSLPCWSIA RIN R S YE TTIEPE   +SPDYDE+LI+NYVPVYV  P    
Subjt:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLSNSPDYDEKLIQNYVPVYVTFP----

Query:  -----------------------------------VKSKRPNQYDWTAYRSLFKII-------QDIISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF
                                           V+SK  NQYDWTAYRSLFKII       Q I+SFHQCGGNV D VNIPL S ILK+G+ NP IF
Subjt:  -----------------------------------VKSKRPNQYDWTAYRSLFKII-------QDIISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF

XP_011658712.1 beta-amylase isoform X1 [Cucumis sativus]4.5e-5060.5Show/hide
Query:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEV-LSNSPDYDEKLIQNYVPVYVTFP---
        MASDTIMAS VCQVH GII+ IA    +VQGE KCK+QVK  K NWSLPCWSIAPRINLRT  YE TTIE EV  S+SPDYD+KLIQNYVPVYV  P   
Subjt:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEV-LSNSPDYDEKLIQNYVPVYVTFP---

Query:  ------------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF
                                            V+SK PNQYDWTAYRSLFKIIQ+       I+SFHQCGGNV D VNIPL S ILKIGELNP IF
Subjt:  ------------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF

XP_023531442.1 beta-amylase-like isoform X1 [Cucurbita pepo subsp. pepo]1.2e-5057.79Show/hide
Query:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLSNSPDYDEKLIQNYVPVYVTFP----
        MAS+TIM SVVCQ+H GIIE I PC GYVQG  KCKVQ KK +LNWSLPCWS A RIN R S +E TTIEPE   +SPDYDE+LIQNYVPVYV  P    
Subjt:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLSNSPDYDEKLIQNYVPVYVTFP----

Query:  -----------------------------------VKSKRPNQYDWTAYRSLFKII-------QDIISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF
                                           V+SK PNQYDWTAYRSLFKII       Q I+SFHQCGGNV D VNIPL S ILK+G+ NP IF
Subjt:  -----------------------------------VKSKRPNQYDWTAYRSLFKII-------QDIISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF

XP_023531443.1 beta-amylase-like isoform X2 [Cucurbita pepo subsp. pepo]1.2e-5057.79Show/hide
Query:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLSNSPDYDEKLIQNYVPVYVTFP----
        MAS+TIM SVVCQ+H GIIE I PC GYVQG  KCKVQ KK +LNWSLPCWS A RIN R S +E TTIEPE   +SPDYDE+LIQNYVPVYV  P    
Subjt:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLSNSPDYDEKLIQNYVPVYVTFP----

Query:  -----------------------------------VKSKRPNQYDWTAYRSLFKII-------QDIISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF
                                           V+SK PNQYDWTAYRSLFKII       Q I+SFHQCGGNV D VNIPL S ILK+G+ NP IF
Subjt:  -----------------------------------VKSKRPNQYDWTAYRSLFKII-------QDIISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF

XP_038887373.1 beta-amylase isoform X1 [Benincasa hispida]5.9e-5863.32Show/hide
Query:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLSNSPDYDEKLIQNYVPVYVTFP----
        MASDTIMASVVCQVH G+IE  APCRGYVQGE KCKVQVKK KLNWSLPCWSI PRIN+RT  YE+T IEPEV S+SPDYD KLIQNYVPVYV  P    
Subjt:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLSNSPDYDEKLIQNYVPVYVTFP----

Query:  -----------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF
                                           V+SK PNQYDWTAYRSLFKIIQ+       I+SFHQCGGNV D VNIPL S +LKIGELNP IF
Subjt:  -----------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF

TrEMBL top hitse value%identityAlignment
A0A1S3C222 Beta-amylase5.4e-4959.5Show/hide
Query:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEV-LSNSPDYDEKLIQNYVPVYVTFP---
        MASDTIMAS VCQVH GII+ IA    + QG+ KCKVQVK  KLNWSLPCWS APRINLRT  YE+TTIEPEV  S+SPDY +KLIQNYVPVYV  P   
Subjt:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEV-LSNSPDYDEKLIQNYVPVYVTFP---

Query:  ------------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF
                                            V+SK PNQYDWTAYRSLFKIIQ+       I+SFHQCGGNV D VNIPL S ILKIGE NP IF
Subjt:  ------------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF

A0A5A7TFD9 Beta-amylase7.1e-4959.5Show/hide
Query:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEV-LSNSPDYDEKLIQNYVPVYVTFP---
        MASDTIMAS VCQVH GII+ IA    + QG+ KCKVQVK  KLNWSLPCWS APRINLRT  YE+TTIEPEV  S+SPDY +KLIQNYVPVYV  P   
Subjt:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEV-LSNSPDYDEKLIQNYVPVYVTFP---

Query:  ------------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF
                                            V+SK PNQYDWTAYRSLFKIIQ+       I+SFHQCGGNV D VNIPL S ILKIGE NP IF
Subjt:  ------------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF

A0A6J1C678 Beta-amylase2.6e-4353.27Show/hide
Query:  MASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPE------VLSNSPDYDEKLIQNYVPVYVTFP----
        M SVVCQ+H GIIE IAPC  YVQG+ K KVQ+KK +LNWSLPC S+A R NLRT+ YE T+IEPE      V S+ PDYD+K+++NYVPVYV  P    
Subjt:  MASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPE------VLSNSPDYDEKLIQNYVPVYVTFP----

Query:  -----------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF
                                           V+SK P QYDWTAY+SLFKIIQ+       I+SFHQCGGNV D VNIPL S ILKIGE NP IF
Subjt:  -----------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF

A0A6J1ESN0 Beta-amylase1.4e-4956.78Show/hide
Query:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLSNSPDYDEKLIQNYVPVYVTFP----
        M S+TIM SVVCQ+H GIIE I PC GYVQG  KCKVQ KK +LNWSLPCWSIA RIN R S YE TT EPE   +SPDYDE+LI+NYVPVYV  P    
Subjt:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLSNSPDYDEKLIQNYVPVYVTFP----

Query:  -----------------------------------VKSKRPNQYDWTAYRSLFKII-------QDIISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF
                                           V+SK  NQYDWTAYRSLFKII       Q I+SFHQCGGNV D VNIPL S ILK+G+ NP IF
Subjt:  -----------------------------------VKSKRPNQYDWTAYRSLFKII-------QDIISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF

A0A6J1JI22 Beta-amylase5.4e-4956.28Show/hide
Query:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLSNSPDYDEKLIQNYVPVYVTFP----
        MAS+TIM SVVCQ+H GIIE I PC GYVQG  KCK Q KK +LNWSLPCWSIA RIN R S ++ TTIEPE   +SPD DE+LI+NYVPVYV  P    
Subjt:  MASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLSNSPDYDEKLIQNYVPVYVTFP----

Query:  -----------------------------------VKSKRPNQYDWTAYRSLFKII-------QDIISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF
                                           V+SK PNQYDWTAYRSLFKII       Q I+SFHQCGGNV D VNIPL S ILK+G+ NP IF
Subjt:  -----------------------------------VKSKRPNQYDWTAYRSLFKII-------QDIISFHQCGGNVEDFVNIPL-SCILKIGELNPVIF

SwissProt top hitse value%identityAlignment
O22585 Beta-amylase5.1e-1249.3Show/hide
Query:  VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIFTQTDRGL
        ++ K P +YDW+AY+SLF+++Q        I+SFHQCGGNV D VNIPL   +L IGE +P IF     G+
Subjt:  VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIFTQTDRGL

O64407 Beta-amylase1.8e-1236.13Show/hide
Query:  DEKLIQNYVPVYVTFP---------------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFV
        D+ ++ NYVPVYV  P                                       ++ K P QYDW+AY+SLF+++Q+       I+SFHQCGGNV D V
Subjt:  DEKLIQNYVPVYVTFP---------------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFV

Query:  NIPL-SCILKIGELNPVIF
        NIP+   +L IGE +P IF
Subjt:  NIPL-SCILKIGELNPVIF

P10538 Beta-amylase6.7e-1236.97Show/hide
Query:  DEKLIQNYVPVYVTFP---------------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFV
        D  ++ NYVPVYV  P                                       ++ K P QYDW AYRSLF+++Q+       I+SFHQCGGNV D V
Subjt:  DEKLIQNYVPVYVTFP---------------------------------------VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFV

Query:  NIPL-SCILKIGELNPVIF
        NIP+   +L IGE N  IF
Subjt:  NIPL-SCILKIGELNPVIF

P25853 Beta-amylase 51.8e-1234.38Show/hide
Query:  DYDEKLIQNYVPVYVTFP----------------------------------------VKSKRPNQYDWTAYRSLFKI-------IQDIISFHQCGGNVE
        +Y+EKL+ NYVPVYV  P                                        ++SK P QYDWTAY++LF++       IQ I+SFHQCGGNV 
Subjt:  DYDEKLIQNYVPVYVTFP----------------------------------------VKSKRPNQYDWTAYRSLFKI-------IQDIISFHQCGGNVE

Query:  DFVNIPL-SCILKIGELNPVIFTQTDRG
        D V IP+   +  +G+ +P I+    +G
Subjt:  DFVNIPL-SCILKIGELNPVIFTQTDRG

Q8L762 Beta-amylase 62.1e-1331.33Show/hide
Query:  KPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLS-NSPDYDEKLIQNYVPVYVTFP---------------------------------------VKSK
        K ++ W L     + R +  T++   +  EP+    N+  Y++K++ NYVPVYV                                          V+SK
Subjt:  KPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLS-NSPDYDEKLIQNYVPVYVTFP---------------------------------------VKSK

Query:  RPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIFTQTDRG
         P QY W+AYR+LF I+Q        I+SFH+CGGN+ D VNIP+   +L+IG+ NP IF     G
Subjt:  RPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIFTQTDRG

Arabidopsis top hitse value%identityAlignment
AT2G32290.1 beta-amylase 61.5e-1431.33Show/hide
Query:  KPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLS-NSPDYDEKLIQNYVPVYVTFP---------------------------------------VKSK
        K ++ W L     + R +  T++   +  EP+    N+  Y++K++ NYVPVYV                                          V+SK
Subjt:  KPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLS-NSPDYDEKLIQNYVPVYVTFP---------------------------------------VKSK

Query:  RPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIFTQTDRG
         P QY W+AYR+LF I+Q        I+SFH+CGGN+ D VNIP+   +L+IG+ NP IF     G
Subjt:  RPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIFTQTDRG

AT2G45880.1 beta-amylase 73.7e-1039.24Show/hide
Query:  VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIFTQTDRGLEQGVPRSW
        V+   P +Y+WT YR LF++++D       ++SFH+CGGNV D V IPL   + +IG  NP I+     G       SW
Subjt:  VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIFTQTDRGLEQGVPRSW

AT4G00490.1 beta-amylase 22.7e-0834.18Show/hide
Query:  VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIFTQTDRGLEQGVPRSW
        V+S  P  Y+W+ Y+ LF++I++       ++SFH+CGGNV D V+I +   + +IG+ NP I+     G       +W
Subjt:  VKSKRPNQYDWTAYRSLFKIIQD-------IISFHQCGGNVEDFVNIPL-SCILKIGELNPVIFTQTDRGLEQGVPRSW

AT4G15210.1 beta-amylase 51.2e-1334.38Show/hide
Query:  DYDEKLIQNYVPVYVTFP----------------------------------------VKSKRPNQYDWTAYRSLFKI-------IQDIISFHQCGGNVE
        +Y+EKL+ NYVPVYV  P                                        ++SK P QYDWTAY++LF++       IQ I+SFHQCGGNV 
Subjt:  DYDEKLIQNYVPVYVTFP----------------------------------------VKSKRPNQYDWTAYRSLFKI-------IQDIISFHQCGGNVE

Query:  DFVNIPL-SCILKIGELNPVIFTQTDRG
        D V IP+   +  +G+ +P I+    +G
Subjt:  DFVNIPL-SCILKIGELNPVIFTQTDRG

AT4G15210.2 beta-amylase 51.2e-1334.38Show/hide
Query:  DYDEKLIQNYVPVYVTFP----------------------------------------VKSKRPNQYDWTAYRSLFKI-------IQDIISFHQCGGNVE
        +Y+EKL+ NYVPVYV  P                                        ++SK P QYDWTAY++LF++       IQ I+SFHQCGGNV 
Subjt:  DYDEKLIQNYVPVYVTFP----------------------------------------VKSKRPNQYDWTAYRSLFKI-------IQDIISFHQCGGNVE

Query:  DFVNIPL-SCILKIGELNPVIFTQTDRG
        D V IP+   +  +G+ +P I+    +G
Subjt:  DFVNIPL-SCILKIGELNPVIFTQTDRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGGATTTTGTTTGTTATTACATACCTGTTGAATAGACATCAAGAATCGAGCCAACGAAGCATGTCTGCCAAGTCATTCCTCTTTGAGATAGGGAAGGAAATGGC
TTCAGACACAATCATGGCAAGTGTTGTGTGCCAAGTGCATGGTGGAATAATAGAGGGAATAGCACCATGCAGAGGATATGTTCAAGGTGAAGCTAAATGTAAAGTGCAAG
TAAAGAAGCCAAAACTCAACTGGTCTCTCCCATGTTGGTCTATAGCACCAAGGATCAATCTTCGGACTTCGACATATGAGGTGACTACGATAGAACCAGAGGTATTGAGC
AACAGTCCTGACTACGATGAAAAGTTGATACAAAATTATGTGCCAGTTTATGTGACGTTCCCAGTAAAATCCAAAAGGCCAAATCAGTACGACTGGACTGCATATAGGAG
CTTATTTAAGATAATTCAAGATATAATATCCTTCCACCAATGTGGAGGGAATGTGGAAGATTTTGTTAATATTCCACTCAGTTGTATTCTCAAAATTGGAGAATTAAATC
CTGTAATTTTTACACAAACCGATCGGGGACTAGAACAAGGAGTACCTCGCTCTTGGAGTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACAGGGATTTTGTTTGTTATTACATACCTGTTGAATAGACATCAAGAATCGAGCCAACGAAGCATGTCTGCCAAGTCATTCCTCTTTGAGATAGGGAAGGAAATGGC
TTCAGACACAATCATGGCAAGTGTTGTGTGCCAAGTGCATGGTGGAATAATAGAGGGAATAGCACCATGCAGAGGATATGTTCAAGGTGAAGCTAAATGTAAAGTGCAAG
TAAAGAAGCCAAAACTCAACTGGTCTCTCCCATGTTGGTCTATAGCACCAAGGATCAATCTTCGGACTTCGACATATGAGGTGACTACGATAGAACCAGAGGTATTGAGC
AACAGTCCTGACTACGATGAAAAGTTGATACAAAATTATGTGCCAGTTTATGTGACGTTCCCAGTAAAATCCAAAAGGCCAAATCAGTACGACTGGACTGCATATAGGAG
CTTATTTAAGATAATTCAAGATATAATATCCTTCCACCAATGTGGAGGGAATGTGGAAGATTTTGTTAATATTCCACTCAGTTGTATTCTCAAAATTGGAGAATTAAATC
CTGTAATTTTTACACAAACCGATCGGGGACTAGAACAAGGAGTACCTCGCTCTTGGAGTCAATAA
Protein sequenceShow/hide protein sequence
MTGILFVITYLLNRHQESSQRSMSAKSFLFEIGKEMASDTIMASVVCQVHGGIIEGIAPCRGYVQGEAKCKVQVKKPKLNWSLPCWSIAPRINLRTSTYEVTTIEPEVLS
NSPDYDEKLIQNYVPVYVTFPVKSKRPNQYDWTAYRSLFKIIQDIISFHQCGGNVEDFVNIPLSCILKIGELNPVIFTQTDRGLEQGVPRSWSQ