; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G019900 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G019900
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionexopolygalacturonase-like
Genome locationCicolChr02:2550746..2552382
RNA-Seq ExpressionCcUC02G019900
SyntenyCcUC02G019900
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR006626 - Parallel beta-helix repeat
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059116.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.8e-13568.34Show/hide
Query:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------
        M VIK SS LV TFLM+LLSF VESRSHVDVIF LRKYG+IV  ADV EALKDAWNDACAS+RPSAV+IPKG FK                         
Subjt:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------

Query:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG
                                                                      RITSLDSKNFHVNILG NNLTF GVNIIAPE+SPNTDG
Subjt:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG

Query:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM
        IHIGRSIGISI KSRIATGDDCISLGDGSKRVK+TNVTCGPGHGISIGSLGKYTNEE VEGVIVKNCTIMNTTNGVRIKTWPASPVAG ATNMHF DI M
Subjt:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM

Query:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS
        VNVSNPIL+DQEY  WNQCNRKIPSKIKINKVSFKNIRGSSATP+ VKLICSSNLPC+EVKVANIDLVYN I   +TS+ MNVKPII G QNPP CSS
Subjt:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS

XP_008455553.1 PREDICTED: exopolygalacturonase-like [Cucumis melo]1.8e-13568.34Show/hide
Query:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------
        M VIK SS LV TFLM+LLSF VESRSHVDVIF LRKYG+IV  ADV EALKDAWNDACAS+RPSAV+IPKG FK                         
Subjt:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------

Query:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG
                                                                      RITSLDSKNFHVNILG NNLTF GVNIIAPE+SPNTDG
Subjt:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG

Query:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM
        IHIGRSIGISI KSRIATGDDCISLGDGSKRVK+TNVTCGPGHGISIGSLGKYTNEE VEGVIVKNCTIMNTTNGVRIKTWPASPVAG ATNMHF DI M
Subjt:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM

Query:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS
        VNVSNPIL+DQEY  WNQCNRKIPSKIKINKVSFKNIRGSSATP+ VKLICSSNLPC+EVKVANIDLVYN I   +TS+ MNVKPII G QNPP CSS
Subjt:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS

XP_031741749.1 exopolygalacturonase-like [Cucumis sativus]2.9e-13366.83Show/hide
Query:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------
        M VIK S+ LVTTFLMSLLSF +ESRSH+DVIFPL KYG+IV  ADV EALK+AWNDACASV PSAV+IPKGIFK                         
Subjt:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------

Query:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG
                                                                      RITSL+SKNFHVNILG NNLTF GVNIIAPE+SPNTDG
Subjt:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG

Query:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM
        IHIGRSIGISI KSRIATGDDCISLGDGSK+VKV NVTCGPGHGISIGSLGKYTNEE VEGVIVKNCTI+NTTNGVRIKTWP SP AG ATNMHFSDI M
Subjt:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM

Query:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS
        VNVSNPIL+DQEY  WNQCNR+IPS IKINKVSF+NIRGSSATP+ VKLICSSNLPCDEVKVANIDL+YN I+  ITSQ MNVKPII GIQNP  CSS
Subjt:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS

XP_031742281.1 exopolygalacturonase-like [Cucumis sativus]2.8e-13668.34Show/hide
Query:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIF--------------------------
        M VIK S+ LVTTFLMSLLSFI+ESRSHVDVIFPLRKYG+IV  ADV EALKDAWNDACASVRPSAV+IPKGIF                          
Subjt:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIF--------------------------

Query:  -------------------------------------------------------------KRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG
                                                                     KRITSLDSKNFHVNILG NNLTF GVNIIAPE+SPNTDG
Subjt:  -------------------------------------------------------------KRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG

Query:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM
        IHIGRSIGISI KS+IATGDDCISLGDGSKRVK+TNVTCGPGHGISIGSLGKYTNEE VEGVIVKNCTIMNTTNGVRIKTWPASP AG AT+MHFSDI M
Subjt:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM

Query:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS
        VNVSNPIL+DQEY  WNQCNR+IPS IKIN VSFKNIRGSSATP+ VKLICSSN PC+EVKVANIDLVYN I+ PITSQ MNVKPI+ GIQNP  CSS
Subjt:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS

XP_038887188.1 exopolygalacturonase-like [Benincasa hispida]1.2e-13968.59Show/hide
Query:  MDVIKSSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIF---------------------------
        M VI SS +VTTFLMSLLSF +E++S VDVIFPLRKYG+IVP  DV EALKDAWNDACASVRP AV+IPKGIF                           
Subjt:  MDVIKSSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIF---------------------------

Query:  ------------------------------------------------------------KRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGI
                                                                    KRITSLDSKNFH+N+LG NNLTFHGVNIIAPENSPNTDGI
Subjt:  ------------------------------------------------------------KRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGI

Query:  HIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMV
        HIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEE VEGVI+KNCTIMNTTNGVRIKTWPASPV+GTATNMHFSDIIMV
Subjt:  HIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMV

Query:  NVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP
        NVSNPIL+DQEY  WNQCNRKIPSKIKI+KVSFKNIRGSSATPM VKLICS  LPCDEVKVANIDLVYN  + PI S  MNVKPII GIQNP TCS P
Subjt:  NVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP

TrEMBL top hitse value%identityAlignment
A0A0A0K3B7 Uncharacterized protein3.9e-13166.83Show/hide
Query:  MDVIKS-SFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------
        M VIK    LVTTFLMSLLSF +E+RSHVD IF LRKYG+IV  ADV EALKDAWNDACAS RPSAV+IPKG FK                         
Subjt:  MDVIKS-SFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------

Query:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG
                                                                      RITSLDSKNFHVNILG NNLTF GVNIIAPENSPNTDG
Subjt:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG

Query:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM
        IHIGRSIGISI KSRIATGDDCISLGDGSKR+KV NV CGPGHGISIGSLGKY NEE VEGVIV NCTI+NTTNGVRIKTWPASPVAG ATNMHFSDI M
Subjt:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM

Query:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS
        VNVSNPIL+DQEY  WNQCNR+IPS IKINKVSFKNIRGSSATP+ VKLICSSNLPC+EVKVANIDLVYN I   ITS+ MNVKPII GIQNPP CSS
Subjt:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS

A0A1S3C2F4 exopolygalacturonase-like8.9e-13668.34Show/hide
Query:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------
        M VIK SS LV TFLM+LLSF VESRSHVDVIF LRKYG+IV  ADV EALKDAWNDACAS+RPSAV+IPKG FK                         
Subjt:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------

Query:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG
                                                                      RITSLDSKNFHVNILG NNLTF GVNIIAPE+SPNTDG
Subjt:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG

Query:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM
        IHIGRSIGISI KSRIATGDDCISLGDGSKRVK+TNVTCGPGHGISIGSLGKYTNEE VEGVIVKNCTIMNTTNGVRIKTWPASPVAG ATNMHF DI M
Subjt:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM

Query:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS
        VNVSNPIL+DQEY  WNQCNRKIPSKIKINKVSFKNIRGSSATP+ VKLICSSNLPC+EVKVANIDLVYN I   +TS+ MNVKPII G QNPP CSS
Subjt:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS

A0A5A7UY44 Exopolygalacturonase-like8.9e-13668.34Show/hide
Query:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------
        M VIK SS LV TFLM+LLSF VESRSHVDVIF LRKYG+IV  ADV EALKDAWNDACAS+RPSAV+IPKG FK                         
Subjt:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------

Query:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG
                                                                      RITSLDSKNFHVNILG NNLTF GVNIIAPE+SPNTDG
Subjt:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG

Query:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM
        IHIGRSIGISI KSRIATGDDCISLGDGSKRVK+TNVTCGPGHGISIGSLGKYTNEE VEGVIVKNCTIMNTTNGVRIKTWPASPVAG ATNMHF DI M
Subjt:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM

Query:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS
        VNVSNPIL+DQEY  WNQCNRKIPSKIKINKVSFKNIRGSSATP+ VKLICSSNLPC+EVKVANIDLVYN I   +TS+ MNVKPII G QNPP CSS
Subjt:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS

A0A5D3DD75 Exopolygalacturonase-like8.9e-13668.34Show/hide
Query:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------
        M VIK SS LV TFLM+LLSF VESRSHVDVIF LRKYG+IV  ADV EALKDAWNDACAS+RPSAV+IPKG FK                         
Subjt:  MDVIK-SSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFK-------------------------

Query:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG
                                                                      RITSLDSKNFHVNILG NNLTF GVNIIAPE+SPNTDG
Subjt:  --------------------------------------------------------------RITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDG

Query:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM
        IHIGRSIGISI KSRIATGDDCISLGDGSKRVK+TNVTCGPGHGISIGSLGKYTNEE VEGVIVKNCTIMNTTNGVRIKTWPASPVAG ATNMHF DI M
Subjt:  IHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIM

Query:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS
        VNVSNPIL+DQEY  WNQCNRKIPSKIKINKVSFKNIRGSSATP+ VKLICSSNLPC+EVKVANIDLVYN I   +TS+ MNVKPII G QNPP CSS
Subjt:  VNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS

A0A6J1C2C8 exopolygalacturonase-like1.7e-12361.81Show/hide
Query:  MDVIKSSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIF---------------------------
        M  IKSSFLV  FLM LL F  ++RS VDV++ LRKYG +V  ADV +AL +AW DACASVRPSAV+IP+GIF                           
Subjt:  MDVIKSSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIF---------------------------

Query:  ------------------------------------------------------------KRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGI
                                                                    KRITSLDSK+FHVNILG NNLTFHGVNIIAPE+SPNTDGI
Subjt:  ------------------------------------------------------------KRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGI

Query:  HIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMV
        HIGRS GI+ITKSRIATGDDCISLGDGSKR+KVTNVTCGPGHGISIGSLG+YT EE V+GVIVKNCTIMNTTNGVRIKTWPAS   GTATNMHF DIIMV
Subjt:  HIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMV

Query:  NVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP
        NVS+PIL+DQEY  WNQCNR+IPSKIKI+KV+FKNIRGSSATP+ VKLICSS LPCDEVK+ +IDL Y  I  P+TSQ  NVKPI+ G QNP  CSSP
Subjt:  NVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)3.4e-7657.44Show/hide
Query:  IPKGIFKRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTN
        +   I + +T+LDSKNFHVN++G  NLTF    I A E S NTDGIHIGRS G++I  + I TGDDCISLGDGSK + +TN+TCGPGHGIS+GSLG+Y N
Subjt:  IPKGIFKRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTN

Query:  EESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNL
        EESV G+ VKNCTI  + NGVRIKTWP S   G A+ MHF DI M +V  PIL+DQ Y  +NQC  ++PS +K++K+SFKNI+G+S T   VKL+CS + 
Subjt:  EESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNL

Query:  PCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCS
        PC+ V++A+IDL Y+    P TS   N+KP I G Q P  CS
Subjt:  PCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCS

P35337 Polygalacturonase6.7e-7252.94Show/hide
Query:  KRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEG
        K +TSLD+KNFH N++   N+TF  + IIAP  SPNTDGIH+GR  G+ I  ++IATGDDCIS+GDG K + +  V CGPGHGIS+GSLG+Y  E+ V  
Subjt:  KRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEG

Query:  VIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVK
        + VKNCT+  T+NG+RIKTWP++    TA  +HF DII+  VSNPIL+DQEY  WNQCN+  PS IK+  ++F+NIRG+S     VKL+CS   PC+ V+
Subjt:  VIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVK

Query:  VANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP
        + +I++ Y   D P T +  NV P ++G QNP  C  P
Subjt:  VANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP

Q39766 Polygalacturonase6.0e-7339.59Show/hide
Query:  LVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVP-DADVIEALKDAWNDACASVRPSAVIIPKG------------------------------------
        +V +  + LL FI  S+   D    + K+G       D+ +   DAW +ACASV PS V+IPKG                                    
Subjt:  LVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVP-DADVIEALKDAWNDACASVRPSAVIIPKG------------------------------------

Query:  ------------------------------------------------------IFKRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGR
                                                              + + ITS DSK FH+N+    N+T   + I AP+ SPNTDGIH+G+
Subjt:  ------------------------------------------------------IFKRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGR

Query:  SIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSN
        S G++I  S I TGDDCIS+GDG+K + +  +TCGPGHGISIGSLGK+ NEE VEG+ + NCTI NT+NG RIKTWP     G  + +HF DI M NVS+
Subjt:  SIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSN

Query:  PILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP
        PIL+DQ+Y  WN+C +   SK+K++ +SFKNIRG+SA P  +K ICS + PC  V++A+ID+ +N  + P TSQ +NVKPI +G  NP  CS P
Subjt:  PILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP

Q39786 Polygalacturonase1.8e-7239.59Show/hide
Query:  LVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVP-DADVIEALKDAWNDACASVRPSAVIIPKG------------------------------------
        +V +  + LL FI  S+   D    + K+G       D+ +   DAW +ACASV PS V+IPKG                                    
Subjt:  LVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVP-DADVIEALKDAWNDACASVRPSAVIIPKG------------------------------------

Query:  ------------------------------------------------------IFKRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGR
                                                              + + ITS DSK FH+N+    N+T   + I AP+ SPNTDGIH+G+
Subjt:  ------------------------------------------------------IFKRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGR

Query:  SIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSN
        S G++I  S I TGDDCIS+GDG+K + +  +TCGPGHGISIGSLGK+ NEE VEG+ + NCTI NT+NG RIKTWP     G  + +HF DI M NVS+
Subjt:  SIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSN

Query:  PILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP
        PIL+DQ+Y  WN+C +   SK+K++ +SFKNIRG+SA P  +K ICS + PC  V++A+ID+ +N  + P TSQ +NVKPI  G  NP  CS P
Subjt:  PILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP

Q40312 Polygalacturonase2.0e-7654.51Show/hide
Query:  IPKGIFKRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTN
        +   I + +TS DSKNFHV + G  N+TF G  I AP +SPNTDGIH+G+S  + I  + I TGDDC+S+GDGSK++ V  V CGPGHG+S+GSLGK+T 
Subjt:  IPKGIFKRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTN

Query:  EESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNL
        EE+VEG+ VKNCT+  T NGVRIKTWP +P   T +++HF DI M NV NP+++DQEY  WNQC++K PSKIK++K+SFKN++G+S T   V LICSS +
Subjt:  EESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNL

Query:  PCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP
        PCD V++ N+DL +N    P T++  NVKP++ G    P C +P
Subjt:  PCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP

Arabidopsis top hitse value%identityAlignment
AT3G07820.1 Pectin lyase-like superfamily protein6.4e-7856.36Show/hide
Query:  ITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVI
        I+S+D+KNFH+N+LG  N+T + + I+APE+SPNTDGIH+GRS G+ I  S I+TGDDCIS+GDG K + V  VTCGPGHGIS+GSLG+Y +E+ V G+ 
Subjt:  ITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVI

Query:  VKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVA
        V NCT+  T NG+RIKTWP++  + TA+++HF DII+ +VSNPIL+DQEY  WNQCN++  S IK+  +SFKNIRG+S     VKL+CS   PC  V++ 
Subjt:  VKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVA

Query:  NIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP
        +ID+ YN  D P T    NV P ILG Q+P  CS+P
Subjt:  NIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP

AT3G07830.1 Pectin lyase-like superfamily protein4.6e-7654.24Show/hide
Query:  ITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVI
        I+S+D+KNFH+N++G  N+TF  V I+AP  SPNTDGIH+GRS+G+SI  SRI+TGDDC+S+GDG   + V NV CGPGHGIS+GSLG+Y +E+ V G+ 
Subjt:  ITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVI

Query:  VKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVA
        V NCT+  T NG+RIKTWP++  + TA+N+HF +II+ NVSNPIL+DQEY  WNQCN++  S IK+  +SF+ IRG+S     VKL+CS   PC+ V+V 
Subjt:  VKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVA

Query:  NIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP
        +I++ Y   D P T    NV+P ++G Q P  C++P
Subjt:  NIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP

AT3G07840.1 Pectin lyase-like superfamily protein4.9e-7857.45Show/hide
Query:  ITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVI
        I+S+D+KNFH+N+LG  N+TF  V +IAP  SPNTDGIH+GRS G+ I  S+IATGDDCIS+GDG K + V NV CGPGHGIS+GSLG+Y +E+ V G+ 
Subjt:  ITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVI

Query:  VKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVA
        V NCT+  T NG+RIKTWP++  A TA+ +HF +II+ NVSNPIL+DQEY  WNQCN++ PS IK+  +SFKNIRG+S     VKL+CS   PC  V++ 
Subjt:  VKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVA

Query:  NIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS
        NI+L Y   D P T    NV P ++G QNP  CS+
Subjt:  NIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSS

AT3G14040.1 Pectin lyase-like superfamily protein3.0e-6752.99Show/hide
Query:  ITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVI
        ITS +SK FH+NIL   N+T   + I AP  S NTDGIHIGRS G+++  ++I TGDDC+S+GDG++ + V NV CGPGHGISIGSLG+Y NE+ V+GV 
Subjt:  ITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVI

Query:  VKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVA
        V+ C I NT NGVRIKTWP SP  G A+N+ F DI M NVS P+L+DQEY  +  C   +PSK+K++ V+ KNI+G+SAT + VKL+CS  +PC  + ++
Subjt:  VKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVA

Query:  NIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCS
        +I+LV+N  + P  S   N+KPI+ G   P  C+
Subjt:  NIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCS

AT5G48140.1 Pectin lyase-like superfamily protein4.2e-7756.36Show/hide
Query:  ITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVI
        ITSLD+K+FH+N++G  N+TF  V IIAP  SPNTDGIH+GRS GI I  S I+TGDDC+S+GDG K + V  VTCGPGHGISIGSLG+Y++EE+V G+ 
Subjt:  ITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNTDGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVI

Query:  VKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVA
        + NCT+  T NG+RIKTWP++    TA+++HF +I++ NVSNPIL+DQEY  WNQCN++ PS IK+  +SFK IRG+S     VKL+CS   PC  V+V 
Subjt:  VKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPILLDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVA

Query:  NIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP
        ++++ Y   D P T Q  NV P ++G Q P  CSSP
Subjt:  NIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTGATCAAATCAAGTTTTTTGGTTACTACATTCTTGATGTCCTTGTTATCATTTATTGTTGAGTCTCGATCTCATGTTGATGTTATTTTTCCTTTGAGGAAGTA
TGGTGATATTGTGCCCGATGCTGATGTCATTGAGGCTTTGAAAGATGCATGGAATGACGCATGTGCATCTGTTCGTCCAAGTGCAGTGATTATTCCAAAGGGGATATTTA
AAAGAATAACATCACTCGATAGCAAGAACTTCCATGTCAACATCCTTGGTCGCAACAACCTCACATTCCATGGTGTCAACATAATTGCACCTGAAAATAGTCCCAACACA
GATGGAATACACATTGGCCGATCAATTGGGATCTCAATCACAAAGTCTCGAATAGCGACAGGAGATGATTGCATCTCCCTCGGAGATGGAAGCAAACGTGTAAAAGTCAC
GAACGTGACATGTGGGCCAGGTCATGGAATAAGCATAGGAAGTCTTGGAAAATACACCAATGAAGAGTCTGTTGAAGGTGTCATAGTAAAAAATTGCACCATAATGAACA
CTACTAATGGTGTTAGGATCAAAACATGGCCAGCCTCTCCCGTTGCTGGCACTGCCACCAACATGCATTTTTCAGATATTATAATGGTCAATGTTAGCAACCCAATTCTC
CTTGACCAAGAGTATCGCCTATGGAATCAGTGTAATCGCAAGATTCCGTCAAAGATTAAGATTAACAAAGTAAGCTTCAAGAACATTAGAGGAAGTTCTGCAACTCCAAT
GACAGTGAAACTTATTTGTAGTAGCAACCTGCCATGTGACGAAGTAAAAGTAGCCAACATTGACCTCGTTTACAATGTAATAGACTGTCCTATTACATCTCAATATATGA
ATGTGAAACCTATCATTTTAGGGATACAAAATCCTCCAACGTGCTCTTCCCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTGATCAAATCAAGTTTTTTGGTTACTACATTCTTGATGTCCTTGTTATCATTTATTGTTGAGTCTCGATCTCATGTTGATGTTATTTTTCCTTTGAGGAAGTA
TGGTGATATTGTGCCCGATGCTGATGTCATTGAGGCTTTGAAAGATGCATGGAATGACGCATGTGCATCTGTTCGTCCAAGTGCAGTGATTATTCCAAAGGGGATATTTA
AAAGAATAACATCACTCGATAGCAAGAACTTCCATGTCAACATCCTTGGTCGCAACAACCTCACATTCCATGGTGTCAACATAATTGCACCTGAAAATAGTCCCAACACA
GATGGAATACACATTGGCCGATCAATTGGGATCTCAATCACAAAGTCTCGAATAGCGACAGGAGATGATTGCATCTCCCTCGGAGATGGAAGCAAACGTGTAAAAGTCAC
GAACGTGACATGTGGGCCAGGTCATGGAATAAGCATAGGAAGTCTTGGAAAATACACCAATGAAGAGTCTGTTGAAGGTGTCATAGTAAAAAATTGCACCATAATGAACA
CTACTAATGGTGTTAGGATCAAAACATGGCCAGCCTCTCCCGTTGCTGGCACTGCCACCAACATGCATTTTTCAGATATTATAATGGTCAATGTTAGCAACCCAATTCTC
CTTGACCAAGAGTATCGCCTATGGAATCAGTGTAATCGCAAGATTCCGTCAAAGATTAAGATTAACAAAGTAAGCTTCAAGAACATTAGAGGAAGTTCTGCAACTCCAAT
GACAGTGAAACTTATTTGTAGTAGCAACCTGCCATGTGACGAAGTAAAAGTAGCCAACATTGACCTCGTTTACAATGTAATAGACTGTCCTATTACATCTCAATATATGA
ATGTGAAACCTATCATTTTAGGGATACAAAATCCTCCAACGTGCTCTTCCCCTTAA
Protein sequenceShow/hide protein sequence
MDVIKSSFLVTTFLMSLLSFIVESRSHVDVIFPLRKYGDIVPDADVIEALKDAWNDACASVRPSAVIIPKGIFKRITSLDSKNFHVNILGRNNLTFHGVNIIAPENSPNT
DGIHIGRSIGISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEESVEGVIVKNCTIMNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSNPIL
LDQEYRLWNQCNRKIPSKIKINKVSFKNIRGSSATPMTVKLICSSNLPCDEVKVANIDLVYNVIDCPITSQYMNVKPIILGIQNPPTCSSP