CuGenDBv2

Gene ID	CcUC02G020130
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	F-box protein SNE-like
Genome location	CicolChr02:2699547..2700026
RNA-Seq Expression	CcUC02G020130
Synteny	CcUC02G020130
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572228.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]

4.6e-66

83.97

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Query:  MQRNAQEEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        MQ NA + D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA NDDSLWEHLCFRH+SS   SS+RPL+LALGGYKRLY+LCLRPV
Subjt:  MQRNAQEEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKP
        L+RLNRSGL+PRV TLQDQVQRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP
Subjt:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKP

KAG7011864.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-67

83.65

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Query:  MQRNAQEEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        MQ NA + D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA NDDSLWEHLCFRH+SS   SS+RPL+LALGGYKRLY+LCLRPV
Subjt:  MQRNAQEEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
        L+RLNRSGL+PRV TLQDQVQRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Subjt:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

XP_022136160.1 F-box protein SNE-like [Momordica charantia]

5.6e-56

73.12

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Query:  MQRNAQEEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVL
        MQRNA E++N+    K FKFSINDHLD+LTEIL+RLD PSLCAAACVCRLWCALA NDDSLWEHLC RH SS PPS+LR +VLALGGYKRLY+LCLRP+L
Subjt:  MQRNAQEEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVL

Query:  TRLN--RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
           N  RS  + RV TLQD +Q LSLSLF VD YER+  + GD AAAAPSLRFLCKP+NV
Subjt:  TRLN--RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

XP_022952371.1 F-box protein SNE-like [Cucurbita moschata]

1.7e-68

84.28

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Query:  MQRNAQEEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        MQ NA + D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA NDDSLWEHLCFRH+SS P SS+RPL+LALGGYKRLY+LCLRPV
Subjt:  MQRNAQEEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
        L+RLNRSGL+PRV TLQDQVQRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Subjt:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

XP_022969281.1 F-box protein SNE-like [Cucurbita maxima]

1.1e-67

83.65

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Query:  MQRNAQEEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        MQ NA + D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA NDDSLWEHLCF H+SS P SS+RPL+LALGGYKRLY+LCLRPV
Subjt:  MQRNAQEEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
        L+RLNRSGL+PRV TLQDQVQRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Subjt:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

TrEMBL top hits

e value

%identity

Alignment

A0A2P6S1H4 Putative F-box domain-containing protein

6.7e-47

66.46

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Query:  MQRNAQEEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVL
        MQ+N+ EE     N +  +F INDH+DI+ E+LKRLD PSL  AACVCRLWC++A N DSLWEHLCFRH+SS PPSS+RP+VLALGGYKRLY++C+RPVL
Subjt:  MQRNAQEEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVL

Query:  TRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
        +RL+ S L+ RVWT +D+VQ LSLSLFCVDYYER   LGG   A+A SL FLC P+NV
Subjt:  TRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

A0A5N6RCK8 F-box domain-containing protein

4.7e-48

69.38

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Query:  MMQRNAQEEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        M Q+ A+E++      KK KF INDH DILTEILKRLD PSL  AACVCRLWCA+A N DSLWEHLCFRH++S PPSS+RP+VLALGGYKRLY++C+RPV
Subjt:  MMQRNAQEEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLNRSGLL-PRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
        LTRL  S L+  RVWT +D+VQ LSLSLFCVDYYER   LGG   A+A SL FLCKP+NV
Subjt:  LTRLNRSGLL-PRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

A0A6J1C339 F-box protein SNE-like

2.7e-56

73.12

Show/hide

Query:  MQRNAQEEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVL
        MQRNA E++N+    K FKFSINDHLD+LTEIL+RLD PSLCAAACVCRLWCALA NDDSLWEHLC RH SS PPS+LR +VLALGGYKRLY+LCLRP+L
Subjt:  MQRNAQEEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVL

Query:  TRLN--RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
           N  RS  + RV TLQD +Q LSLSLF VD YER+  + GD AAAAPSLRFLCKP+NV
Subjt:  TRLN--RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

A0A6J1GK18 F-box protein SNE-like

8.2e-69

84.28

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Query:  MQRNAQEEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        MQ NA + D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA NDDSLWEHLCFRH+SS P SS+RPL+LALGGYKRLY+LCLRPV
Subjt:  MQRNAQEEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
        L+RLNRSGL+PRV TLQDQVQRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Subjt:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

A0A6J1HXD0 F-box protein SNE-like

5.3e-68

83.65

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Query:  MQRNAQEEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        MQ NA + D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA NDDSLWEHLCF H+SS P SS+RPL+LALGGYKRLY+LCLRPV
Subjt:  MQRNAQEEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
        L+RLNRSGL+PRV TLQDQVQRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Subjt:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

2.6e-11

39.83

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Query:  DILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPS--SLRPLVLALGGYKRLYLLCLRPVLTR-----LNRSGLLPRVWTLQDQV
        D++ E+L+R +A +L AAACV R W  LA  D+ LWE  C R  ++   S   LR +VL+LGG++RL+ + +RP+  R       +    P V   +DQV
Subjt:  DILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPS--SLRPLVLALGGYKRLYLLCLRPVLTR-----LNRSGLLPRVWTLQDQV

Query:  QRLSLSLFCVDYYERNDC
        Q LSLSLF + +++   C
Subjt:  QRLSLSLFCVDYYERNDC

Q9LUB6 F-box protein SNE

9.7e-35

56.77

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Query:  EQNNNKKFK------FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLN
        E++NNK+ +      FSINDH D+L EIL+RLD  SLC+AACVCRLW A+A N DS+WE LCFR +S  P  SLR +V ALGGY+ LY LC+RPVL R  
Subjt:  EQNNNKKFK------FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLN

Query:  RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAP-SLRFLCKPLNV
            LP++   +DQ+Q LSLSL+CV YYER   +G  L  A P SL FL KP+NV
Subjt:  RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAP-SLRFLCKPLNV

Q9STX3 F-box protein GID2

4.9e-10

34.81

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Query:  DNEQNNNKKFKFSINDHL-------DILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSS--SPPSSLRPLVLALGGYKRLYLLCLRPV
        D     NKK K +  + +       +++ E+LK +DA +L  ++CV ++W   A  D+ LWE +C RH ++     + LR +VLALGG++RL+ L L P 
Subjt:  DNEQNNNKKFKFSINDHL-------DILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSS--SPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYER
        L++ N     PR    +D++ +L+LSL  + YYE+
Subjt:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYER

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

3.5e-11

34.81

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Query:  DNEQNNNKKFKFSINDHL-------DILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSS--SPPSSLRPLVLALGGYKRLYLLCLRPV
        D     NKK K +  + +       +++ E+LK +DA +L  ++CV ++W   A  D+ LWE +C RH ++     + LR +VLALGG++RL+ L L P 
Subjt:  DNEQNNNKKFKFSINDHL-------DILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSS--SPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYER
        L++ N     PR    +D++ +L+LSL  + YYE+
Subjt:  LTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYER

AT5G48170.1 F-box family protein

6.9e-36

56.77

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Query:  EQNNNKKFK------FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLN
        E++NNK+ +      FSINDH D+L EIL+RLD  SLC+AACVCRLW A+A N DS+WE LCFR +S  P  SLR +V ALGGY+ LY LC+RPVL R  
Subjt:  EQNNNKKFK------FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLN

Query:  RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAP-SLRFLCKPLNV
            LP++   +DQ+Q LSLSL+CV YYER   +G  L  A P SL FL KP+NV
Subjt:  RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAP-SLRFLCKPLNV

Sequences

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CDS sequence

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ATGATGCAGCGAAATGCACAAGAAGAAGATAACGAACAGAACAACAACAAGAAATTCAAATTCTCAATCAACGATCACCTCGACATTCTCACCGAAATCCTCAAGCGACT
CGACGCTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTAGCAACGACGATTCACTCTGGGAGCATCTCTGTTTCCGCCACCTCTCTTCTT
CGCCGCCTTCCTCCCTCCGCCCTCTCGTTCTCGCTCTCGGCGGCTACAAGAGACTCTATTTGCTCTGCCTCCGTCCCGTCCTCACTCGATTGAATCGCTCCGGTTTGCTC
CCTCGCGTTTGGACTCTCCAAGATCAGGTTCAACGACTCTCCCTCTCCTTGTTCTGCGTCGATTACTATGAGAGAAACGATTGCCTTGGCGGCGATTTGGCCGCCGCGGC
TCCTTCGCTGCGCTTCCTCTGCAAACCGCTGAACGTATAA

mRNA sequence

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Protein sequence

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MMQRNAQEEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLL
PRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

CcUC02G020130 (gene) of Watermelon (PI 537277) v1 genome