; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G022150 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G022150
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRibosomal protein S12
Genome locationCicolChr02:4534335..4534706
RNA-Seq ExpressionCcUC02G022150
SyntenyCcUC02G022150
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005679 - Ribosomal protein S12, bacterial-type
IPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ALE29227.1 ribosomal protein S12 [Heuchera parviflora var. saurensis]1.0e-6097.56Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRT+ASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHS+VLIRGGRVKDLPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

KAG4934588.1 hypothetical protein JHK85_049507 [Glycine max]1.7e-6097.56Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRT+ASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKDLPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

QWX88123.1 ribosomal protein S12 [Indigofera tinctoria]3.4e-6198.37Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRT+ASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

YP_007516865.1 ribosomal protein S12 [Glycine max]1.7e-6097.56Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRT+ASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKDLPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

YP_009709935.1 ribosomal protein S12 [Manihot esculenta]1.7e-6097.56Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRT+ASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKD PGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

TrEMBL top hitse value%identityAlignment
A0A0M4N326 Ribosomal protein S124.9e-6197.56Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRT+ASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHS+VLIRGGRVKDLPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

A0A0M4RVQ0 Ribosomal protein S128.3e-6197.56Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRT+ASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKDLPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

A0A6C0M8Z1 Ribosomal protein S128.3e-6197.56Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRT+ASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKDLPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

A0A6C0M9Y2 Ribosomal protein S128.3e-6197.56Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRT+ASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKDLPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

Q9XPB3 Rps128.3e-6197.56Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRT+ASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKDLPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

SwissProt top hitse value%identityAlignment
P27070 Ribosomal protein S12, mitochondrial3.6e-6194.31Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRT+ASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVRL+NRHDIF HIPGEGHN QEHSMVLIRGGRVKD PGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

P60096 Ribosomal protein S12, mitochondrial3.4e-5992.68Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRT+ASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEH MVLIRGGRVKD PGVKSH IRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI +RRRGRSKYGAE+PK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

P68535 Ribosomal protein S12, mitochondrial2.7e-6195.12Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MP+LNQLIRHGREEKRRTDRT+A DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKD PGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

P68536 Ribosomal protein S12, mitochondrial2.7e-6195.12Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MP+LNQLIRHGREEKRRTDRT+A DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKD PGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

Q95869 Ribosomal protein S12, mitochondrial1.2e-5993.5Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRT+A DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKD PGVK HCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDLLGI DRRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein7.7e-5990.24Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRT+A D+CPQK GV PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKD PGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDL+GI  RRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

ATCG00065.1 ribosomal protein S12A5.3e-3659.35Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKDLPGV+ H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

ATCG00905.1 ribosomal protein S12C5.3e-3659.35Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKDLPGV+ H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

ATCG01230.1 ribosomal protein S12B5.3e-3659.35Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKDLPGV+ H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK

ATMG00980.1 Ribosomal protein S12/S23 family protein7.7e-5990.24Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRT+A D+CPQK GV PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKD PGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRG

Query:  VKDLLGILDRRRGRSKYGAEKPK
        VKDL+GI  RRRGRSKYGAEKPK
Subjt:  VKDLLGILDRRRGRSKYGAEKPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTACATTAAATCAATTGATTCGTCATGGTCGAGAAGAAAAACGGCGCACTGACCGGACTCAAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGT
TTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGTGAAGGTCATAATT
TGCAGGAACATTCTATGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTTGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCTGGATCGA
AGAAGAGGCAGATCTAAATATGGTGCAGAAAAACCAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTACATTAAATCAATTGATTCGTCATGGTCGAGAAGAAAAACGGCGCACTGACCGGACTCAAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGT
TTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGTGAAGGTCATAATT
TGCAGGAACATTCTATGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTTGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCTGGATCGA
AGAAGAGGCAGATCTAAATATGGTGCAGAAAAACCAAAATAG
Protein sequenceShow/hide protein sequence
MPTLNQLIRHGREEKRRTDRTQASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRGVKDLLGILDR
RRGRSKYGAEKPK