CuGenDBv2

Gene ID	CcUC02G022360
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Nuclear polyadenylated RNA-binding protein 3-like
Genome location	CicolChr02:4741565..4742092
RNA-Seq Expression	CcUC02G022360
Synteny	CcUC02G022360
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033784.1 nuclear polyadenylated RNA-binding protein 3-like [Cucumis melo var. makuwa]

1.4e-79

86.63

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Query:  MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL-------
        MEA+SG SSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQGEN SVD  V +DLREMISPVLAVPISLVEDRIDGSL       
Subjt:  MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL-------

Query:  ---EDGFAYGYNDAQEEDETDD--HDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
           EDGFAYGY+DA+EEDE DD   DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ---EDGFAYGYNDAQEEDETDD--HDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_008448068.1 PREDICTED: uncharacterized protein LOC103490356 [Cucumis melo]

3.1e-79

84.02

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Query:  MEAISG-------SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL
        MEA+SG       SSSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQGEN SVD  V +DLREMISPVLAVPISLVEDRIDGSL
Subjt:  MEAISG-------SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL

Query:  ----------EDGFAYGYNDAQEEDETDD--HDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
                  EDGFAYGY+DA+EEDE DD   DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----------EDGFAYGYNDAQEEDETDD--HDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_011658549.2 uncharacterized protein LOC101212092 [Cucumis sativus]

3.6e-80

87.7

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Query:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------
        MEAISG SSSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQG NCSVD  V +DLREMISPVLAVPISLVEDRID SL      
Subjt:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------

Query:  ----EDGFAYGYNDAQEEDET-DDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            EDGFAYGYNDA+EEDE  DD DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----EDGFAYGYNDAQEEDET-DDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_023553634.1 histone H2A.Z-specific chaperone CHZ1-like [Cucurbita pepo subsp. pepo]

6.8e-71

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Query:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------
        MEA+SG SSSSSSS+EF FYDDFEYEFVED+ERLSNWE L+A DADSEMDGNGGE++G+NC V AR+ EDLRE+ISPV+ VPISL EDRI   L      
Subjt:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------

Query:  ----EDGFAYGYNDAQE----------EDETDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            EDGFAYGYNDA+E          +D+ DD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----EDGFAYGYNDAQE----------EDETDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_038886897.1 uncharacterized protein LOC120077100 [Benincasa hispida]

1.9e-73

82.63

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Query:  MEAISGSSSSSS-SLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------
        MEAISGSSSSSS S  FVF DDFEYEFVEDIERLSNWELLDAFDADSEMDGNG EEQGENCSVD RV+EDLREMI     VPISLVEDRIDGSL      
Subjt:  MEAISGSSSSSS-SLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------

Query:  ----EDGFAYGYNDAQEEDETD----DHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            ED FAYGYND+ EE+E +    D DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----EDGFAYGYNDAQEEDETD----DHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K4F3 Uncharacterized protein

1.7e-80

87.7

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Query:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------
        MEAISG SSSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQG NCSVD  V +DLREMISPVLAVPISLVEDRID SL      
Subjt:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------

Query:  ----EDGFAYGYNDAQEEDET-DDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            EDGFAYGYNDA+EEDE  DD DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----EDGFAYGYNDAQEEDET-DDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A1S3BJG2 uncharacterized protein LOC103490356

1.5e-79

84.02

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Query:  MEAISG-------SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL
        MEA+SG       SSSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQGEN SVD  V +DLREMISPVLAVPISLVEDRIDGSL
Subjt:  MEAISG-------SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL

Query:  ----------EDGFAYGYNDAQEEDETDD--HDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
                  EDGFAYGY+DA+EEDE DD   DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----------EDGFAYGYNDAQEEDETDD--HDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A5A7SRG7 Nuclear polyadenylated RNA-binding protein 3-like

6.6e-80

86.63

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Query:  MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL-------
        MEA+SG SSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQGEN SVD  V +DLREMISPVLAVPISLVEDRIDGSL       
Subjt:  MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL-------

Query:  ---EDGFAYGYNDAQEEDETDD--HDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
           EDGFAYGY+DA+EEDE DD   DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ---EDGFAYGYNDAQEEDETDD--HDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A6J1C3A5 uncharacterized protein LOC111007551

2.4e-61

69.27

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Query:  MEAISG--SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDG-------
        ME++SG  SSSSSSS+EFVF+DDF++EFV+++ERLSNWE LDA  +D+EMDG+ G+ +G + SVD RV  DLRE +SPV AVPISL EDRID        
Subjt:  MEAISG--SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDG-------

Query:  -SLEDGFAYGYN-------DAQEEDETDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
          LEDGFAYGY+        A+E++  DD DE+DLDDELVPWSVS KLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  -SLEDGFAYGYN-------DAQEEDETDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A6J1I004 uncharacterized protein LOC111468462

7.4e-71

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Query:  MEAISG----SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL---
        MEA+SG    SSSSSSS+EF FYDDFEYEFVED+ERLSNWE L+A DADSEMDGNGGE++G+NC V AR+ EDL EMISPV+ VPISL EDRI   L   
Subjt:  MEAISG----SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL---

Query:  -------EDGFAYGYNDAQEE-------DETDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
               EDGFAYGYNDA+E+       D+ DD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  -------EDGFAYGYNDAQEE-------DETDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G34630.1 unknown protein

5.5e-18

65.82

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Query:  GFAYG--YNDAQEEDETDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLK
        G  YG   ND  EED   D D +DLD+ELVP SVS K+GRQRMRKLGKR   K+Y SK SPFL  KPG VRGKHGLG+K
Subjt:  GFAYG--YNDAQEEDETDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLK

AT5G48420.1 unknown protein

5.1e-08

41.94

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Query:  ISLVEDRIDGSLEDGFAYGYNDAQEEDETDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFT--KPGCVRGKHGLGLK
        +SL ED    S++DG      D  EED+ D +D+ D D ELV          QR+RK GKR F K    K+  + ++  KPGCV GKHGL +K
Subjt:  ISLVEDRIDGSLEDGFAYGYNDAQEEDETDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFT--KPGCVRGKHGLGLK

Sequences

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CDS sequence

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ATGGAGGCCATTTCTGGATCATCATCTTCTTCTTCTTCTTTGGAATTCGTGTTTTATGATGATTTTGAATACGAATTTGTTGAAGATATCGAACGTCTTTCGAACTGGGA
GTTGCTCGATGCTTTTGATGCCGATTCAGAAATGGACGGAAATGGAGGCGAAGAACAAGGGGAAAACTGCAGCGTTGACGCTAGAGTTCATGAAGATCTTCGAGAGATGA
TTTCTCCTGTTCTCGCGGTGCCGATTTCGCTTGTGGAGGATCGAATCGACGGTTCTTTGGAAGACGGTTTTGCGTACGGTTATAACGATGCGCAGGAGGAGGATGAAACC
GATGATCATGATGAGTTCGATTTGGATGACGAACTCGTTCCGTGGTCTGTCAGTGATAAACTCGGACGGCAGAGGATGAGGAAATTGGGGAAAAGAGGTTTTACGAAGAT
GTATAATTCGAAGAGATCTCCGTTTTTGTTCACAAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGCTTGAAACACAGTTATTAG

mRNA sequence

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Protein sequence

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MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSLEDGFAYGYNDAQEEDET
DDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

CcUC02G022360 (gene) of Watermelon (PI 537277) v1 genome