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CcUC02G022560 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G022560
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionProtein RADIALIS-like 1
Genome locationCicolChr02:5064048..5065625
RNA-Seq ExpressionCcUC02G022560
SyntenyCcUC02G022560
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036165.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]2.1e-2588.24Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS++A GPSTPWT KQNKAFEKALAV D+DTPERWLNVAKA+GGKTEEEVKRHYQLLVEDVK+IESG
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

KAE8645640.1 hypothetical protein Csa_020521 [Cucumis sativus]4.4e-2383.82Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS++A GPST WT  QNKAFEKALAV D+DTPERWLNVAKA+GGKTEEEVK HYQLLVEDVK+IESG
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]1.2e-2080.88Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS+SA G S  WT KQNKAFEKALA+ D+DTP+RWLNVAKA+GGKTEEEVKRHYQLL+EDVK+IESG
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]2.4e-2182.35Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS+S+ G S+ WT KQNKAFEKALAV DQDTPERWLNVAKA+GGKT EEVKRHY+LLVEDVK+IESG
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

XP_022952074.1 protein RADIALIS-like 1 [Cucurbita moschata]4.9e-2282.35Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS+SA G +  WT KQNKAFEKALAV DQDTPERWLNVAKA+GGKTEEEVKRHYQLL++DVK IESG
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

TrEMBL top hitse value%identityAlignment
A0A0A0K3K5 SANT domain-containing protein2.2e-2383.82Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS++A GPST WT  QNKAFEKALAV D+DTPERWLNVAKA+GGKTEEEVK HYQLLVEDVK+IESG
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

A0A5A7T3V4 Protein RADIALIS-like 11.0e-2588.24Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS++A GPSTPWT KQNKAFEKALAV D+DTPERWLNVAKA+GGKTEEEVKRHYQLLVEDVK+IESG
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

A0A6J1C385 protein RADIALIS-like 11.2e-2182.35Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS+S+ G S+ WT KQNKAFEKALAV DQDTPERWLNVAKA+GGKT EEVKRHY+LLVEDVK+IESG
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

A0A6J1GKK4 protein RADIALIS-like 12.4e-2282.35Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS+SA G +  WT KQNKAFEKALAV DQDTPERWLNVAKA+GGKTEEEVKRHYQLL++DVK IESG
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

A0A6J1GKV1 protein RADIALIS-like 15.9e-2179.41Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS+SA G S+ WT ++NKAFEKALAV DQDTPERW+NVAKA+GGKTE+EVKRHYQLLV+DVK+IESG
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.5e-1866.67Show/hide
Query:  MASISAFGPST-PWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS S    S+  WT KQNKAFE+ALA  DQDTP RW NVAK +GGKT EEVKRHY+LLV+D+  IE+G
Subjt:  MASISAFGPST-PWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

Q1A173 Protein RADIALIS-like 62.9e-1770.69Show/hide
Query:  TPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        +PWT  QNK FE+ALAV D+DTP+RW NVAKA+GGKT EEVKRHY +LVED+  IE+G
Subjt:  TPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

Q58FS3 Transcription factor RADIALIS2.4e-1965.62Show/hide
Query:  SAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        S  G   PW+ K+NKAFE+ALAV D+DTP+RW NVA+A+ G+T EEVK+HY++LVED+KYIESG
Subjt:  SAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

Q6NNN0 Protein RADIALIS-like 38.4e-1761.76Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS ++   S  WT K+NK FE+ALA  DQDTP+RW NVA+A+GGK+ EEV+RHY+LL+ DV  IESG
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

Q9SIJ5 Protein RADIALIS-like 21.0e-1766.67Show/hide
Query:  SISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        S+S++G S  WT KQNKAFE+ALAV DQDTP+RW NVA+A+GGKT EE KR Y LLV D++ IE+G
Subjt:  SISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.3e-1765.15Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIE
        MAS S+   S+ WT+KQNK FE+ALAV D+DTP+RW NVAKA+G K+ EEVKRHY +LVED+  IE
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIE

AT1G75250.1 RAD-like 62.1e-1870.69Show/hide
Query:  TPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        +PWT  QNK FE+ALAV D+DTP+RW NVAKA+GGKT EEVKRHY +LVED+  IE+G
Subjt:  TPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

AT1G75250.2 RAD-like 62.1e-1870.69Show/hide
Query:  TPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        +PWT  QNK FE+ALAV D+DTP+RW NVAKA+GGKT EEVKRHY +LVED+  IE+G
Subjt:  TPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

AT2G21650.1 Homeodomain-like superfamily protein7.1e-1966.67Show/hide
Query:  SISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        S+S++G S  WT KQNKAFE+ALAV DQDTP+RW NVA+A+GGKT EE KR Y LLV D++ IE+G
Subjt:  SISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG

AT4G39250.1 RAD-like 13.2e-1966.67Show/hide
Query:  MASISAFGPST-PWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG
        MAS S    S+  WT KQNKAFE+ALA  DQDTP RW NVAK +GGKT EEVKRHY+LLV+D+  IE+G
Subjt:  MASISAFGPST-PWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTTCTGCTTTTGGACCAAGCACTCCATGGACTACAAAGCAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTAATGATCAAGATACACCTGAAAGATGGCT
CAATGTTGCAAAGGCCATGGGTGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTACTTGTGGAAGATGTTAAGTATATTGAGTCCGGATGGAGAATAAAAGAAG
TTGGATTGAGCCAATTCTTGCAGTACATGAAGTTGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATTTCTGCTTTTGGACCAAGCACTCCATGGACTACAAAGCAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTAATGATCAAGATACACCTGAAAGATGGCT
CAATGTTGCAAAGGCCATGGGTGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTACTTGTGGAAGATGTTAAGTATATTGAGTCCGGATGGAGAATAAAAGAAG
TTGGATTGAGCCAATTCTTGCAGTACATGAAGTTGGATTGAGCCAATTCTTGCAGTGCTTGAAGAATAAAAGAAAGAAAGAACCATTTTGTTTGCTTTTTTGTGCCCATT
TTAAATGTAATTGTAATTTTCATTGGAATAAAG
Protein sequenceShow/hide protein sequence
MASISAFGPSTPWTTKQNKAFEKALAVNDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESGWRIKEVGLSQFLQYMKLD