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CcUC02G022580 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G022580
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionprotein RADIALIS-like 1
Genome locationCicolChr02:5092936..5094402
RNA-Seq ExpressionCcUC02G022580
SyntenyCcUC02G022580
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572041.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3086.84Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNS
        MASMS+ GS+AWTPM+NKAFEKALAVYDQDTPERWLNVAKA+G KTEEEVKRHYQLL+ DVKHIESG +PFPYRNS
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNS

XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]3.0e-3285.19Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSSR
        MASMSAHGS+ WT +ENKAFEKALA+YD+DTPERWLNVAKAIGGKTEE+VKRHYQLL+EDV HIE+G+IPFPYRNS RSSR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSSR

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]1.6e-3086.84Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNS
        MASMS+ GS+AWTPM+NKAFEKALAVYDQDTPERWLNVAKA+G KTEEEVKRHYQLL+ DVKHIESG +PFPYRNS
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNS

XP_022952660.1 protein RADIALIS-like 1 [Cucurbita moschata]9.5e-3188.46Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMR
        MASMSAHGSSAWT  ENKAFEKALAV+DQDTPERW+NVAKAIGGKTE+EVKRHYQLLV+DVKHIESGEI FPYR+S R
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMR

XP_022972544.1 protein RADIALIS-like 1 [Cucurbita maxima]2.8e-3087.18Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMR
        MASMSAHGSSAWT  ENKAFEKALAV+DQDTP+RW+NVAKAIGGKTE+EVKRHYQLLV DVKHIESGEI FPYR+S R
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMR

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein1.7e-3388.89Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSSR
        MASMSAHGSSAWT +ENKAFEKALA+YD+DTPERWLNVAKAIGGKTEEEVKRHYQLL+EDV HIESG+IPFPYR S RSSR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSSR

A0A1S3BGF0 protein RADIALIS-like 11.4e-3285.19Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSSR
        MASMSAHGS+ WT +ENKAFEKALA+YD+DTPERWLNVAKAIGGKTEE+VKRHYQLL+EDV HIE+G+IPFPYRNS RSSR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSSR

A0A6J1GK35 protein RADIALIS-like 17.9e-3186.84Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNS
        MASMS+ GS+AWTPM+NKAFEKALAVYDQDTPERWLNVAKA+G KTEEEVKRHYQLL+ DVKHIESG +PFPYRNS
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNS

A0A6J1GKV1 protein RADIALIS-like 14.6e-3188.46Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMR
        MASMSAHGSSAWT  ENKAFEKALAV+DQDTPERW+NVAKAIGGKTE+EVKRHYQLLV+DVKHIESGEI FPYR+S R
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMR

A0A6J1I8Y0 protein RADIALIS-like 11.3e-3087.18Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMR
        MASMSAHGSSAWT  ENKAFEKALAV+DQDTP+RW+NVAKAIGGKTE+EVKRHYQLLV DVKHIESGEI FPYR+S R
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.6e-2365.79Show/hide
Query:  ASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YRNS
        +SMS+  S +WT  +NKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LLV+D+  IE+G +PFP YR S
Subjt:  ASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YRNS

Q1A173 Protein RADIALIS-like 67.1e-2160Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSS
        MAS S    S WT  +NK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+G +P P   +  S+
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSS

Q58FS3 Transcription factor RADIALIS2.4e-2162.34Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YRNS
        MAS    G   W+  ENKAFE+ALAVYD+DTP+RW NVA+A+ G+T EEVK+HY++LVED+K+IESG++PFP YR +
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YRNS

Q6NNN0 Protein RADIALIS-like 35.4e-2162.34Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YRNS
        MAS S   S++WT  ENK FE+ALA YDQDTP+RW NVA+A+GGK+ EEV+RHY+LL+ DV  IESG  P P YR++
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YRNS

Q9SIJ5 Protein RADIALIS-like 29.9e-2367.14Show/hide
Query:  SMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
        SMS++GS +WT  +NKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LLV D++ IE+G +PFP
Subjt:  SMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.3e-2162.5Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
        MAS S   SS+WT  +NK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +LVED+ +IE   +P P
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP

AT1G75250.1 RAD-like 65.1e-2260Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSS
        MAS S    S WT  +NK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+G +P P   +  S+
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSS

AT1G75250.2 RAD-like 65.1e-2260Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSS
        MAS S    S WT  +NK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+G +P P   +  S+
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSS

AT2G21650.1 Homeodomain-like superfamily protein7.1e-2467.14Show/hide
Query:  SMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
        SMS++GS +WT  +NKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LLV D++ IE+G +PFP
Subjt:  SMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP

AT4G39250.1 RAD-like 11.9e-2465.79Show/hide
Query:  ASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YRNS
        +SMS+  S +WT  +NKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LLV+D+  IE+G +PFP YR S
Subjt:  ASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YRNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTGCACATGGGTCTAGTGCATGGACTCCAATGGAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGACACACCTGAGAGATGGCTCAA
TGTAGCAAAGGCCATTGGTGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTGGAGGATGTTAAGCATATCGAGTCTGGTGAAATTCCTTTTCCCTATC
GAAACTCTATGAGATCGAGTCGATGTGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCTGCACATGGGTCTAGTGCATGGACTCCAATGGAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGACACACCTGAGAGATGGCTCAA
TGTAGCAAAGGCCATTGGTGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTGGAGGATGTTAAGCATATCGAGTCTGGTGAAATTCCTTTTCCCTATC
GAAACTCTATGAGATCGAGTCGATGTGAGTAACATTAGTGGTTGAAATGAGCCAGCTCATGCAGTATGGAAGAATAAAGGAATGAAGGAAGAAGAACCATTTGCTCTCTA
TTGTACTACCCTCTAAATGTAACTGTAAAGTAGAATTATTGACAGAATAATATATTCTTGGTGTTTTCTTTTTTGAAAAACTGTGAACCATTTTCAATGTATTCAGTTCA
TTAAATACAACTAGATTAATTCATCTATATA
Protein sequenceShow/hide protein sequence
MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYRNSMRSSRCE