; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G024110 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G024110
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionGRF-type domain-containing protein
Genome locationCicolChr02:7464953..7468166
RNA-Seq ExpressionCcUC02G024110
SyntenyCcUC02G024110
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4320931.1 unnamed protein product [Prunus armeniaca]1.1e-4060Show/hide
Query:  EESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELTLELSA
        E+S L+C CG+PAKLR+SQT KNPFRLFYNCPK IS QC FF W+DEP P  DR  +E +LIR+ CIRL E   EI+ E + E+ EW REK+ELT +LS 
Subjt:  EESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELTLELSA

Query:  LQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL
        LQ++LD +  RI+M NES  MPP D LSI D  D+DDDALV++ +
Subjt:  LQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL

KAE8645848.1 hypothetical protein Csa_017077 [Cucumis sativus]4.2e-6180.14Show/hide
Query:  SLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELT
        S  ++EES LECYCGV AKLRMS TEK PFRLFYNCPKEISQQCGFFHWADE EP +DRHANELDLIRNVCIRLTE  +EI  EHEDEK EWEREKAELT
Subjt:  SLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELT

Query:  LELSALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALV
        L+LS LQTQLDDIHNR+R+TNESFSMPPF+SLSIRDD+D++   +V
Subjt:  LELSALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALV

XP_004136954.1 uncharacterized protein LOC101219463 [Cucumis sativus]1.0e-6281.33Show/hide
Query:  SLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELT
        S  ++EES LECYCGV AKLRMS TEK PFRLFYNCPKEISQQCGFFHWADE EP +DRHANELDLIRNVCIRLTE  +EI  EHEDEK EWEREKAELT
Subjt:  SLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELT

Query:  LELSALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL
        L+LS LQTQLDDIHNR+R+TNESFSMPPF+SLSIRD  D+DD+ LVIY L
Subjt:  LELSALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL

XP_008455003.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo]2.7e-6381.33Show/hide
Query:  SLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELT
        S  ++EES LECYCG  AKLRMS TEKNPFRLFYNCPKE+SQQCGFFHWADEPEP DDRHANELDLIRNVCIRLTE  +EI  EHEDEK EWEREKAELT
Subjt:  SLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELT

Query:  LELSALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL
        L+LS LQTQLDDI+NRIR+TNESFSMPPF+SLSIRDD D+++D LV+Y L
Subjt:  LELSALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL

XP_022148840.1 uncharacterized protein LOC111017399 [Momordica charantia]7.5e-5876.19Show/hide
Query:  VHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELTLEL
        + EES LECYCG+PAKLR SQT KNPFRLFYNCPKEISQQCGFFHWADEPEP DDRH  EL+LIRNVC+ L +  +EIE EH++EKAEWER+K ELTL+L
Subjt:  VHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELTLEL

Query:  SALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL
          LQ+QLDDI +RIRM NESFSMPP D+LSIRD  DE DDALVIY L
Subjt:  SALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL

TrEMBL top hitse value%identityAlignment
A0A0A0K2H6 GRF-type domain-containing protein4.9e-6381.33Show/hide
Query:  SLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELT
        S  ++EES LECYCGV AKLRMS TEK PFRLFYNCPKEISQQCGFFHWADE EP +DRHANELDLIRNVCIRLTE  +EI  EHEDEK EWEREKAELT
Subjt:  SLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELT

Query:  LELSALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL
        L+LS LQTQLDDIHNR+R+TNESFSMPPF+SLSIRD  D+DD+ LVIY L
Subjt:  LELSALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL

A0A1S4E0B8 uncharacterized protein LOC1034952841.3e-6381.33Show/hide
Query:  SLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELT
        S  ++EES LECYCG  AKLRMS TEKNPFRLFYNCPKE+SQQCGFFHWADEPEP DDRHANELDLIRNVCIRLTE  +EI  EHEDEK EWEREKAELT
Subjt:  SLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELT

Query:  LELSALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL
        L+LS LQTQLDDI+NRIR+TNESFSMPPF+SLSIRDD D+++D LV+Y L
Subjt:  LELSALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL

A0A5A7SJM5 GRF-type domain-containing protein1.3e-6381.33Show/hide
Query:  SLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELT
        S  ++EES LECYCG  AKLRMS TEKNPFRLFYNCPKE+SQQCGFFHWADEPEP DDRHANELDLIRNVCIRLTE  +EI  EHEDEK EWEREKAELT
Subjt:  SLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELT

Query:  LELSALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL
        L+LS LQTQLDDI+NRIR+TNESFSMPPF+SLSIRDD D+++D LV+Y L
Subjt:  LELSALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL

A0A6J1D427 uncharacterized protein LOC1110173993.6e-5876.19Show/hide
Query:  VHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELTLEL
        + EES LECYCG+PAKLR SQT KNPFRLFYNCPKEISQQCGFFHWADEPEP DDRH  EL+LIRNVC+ L +  +EIE EH++EKAEWER+K ELTL+L
Subjt:  VHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELTLEL

Query:  SALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL
          LQ+QLDDI +RIRM NESFSMPP D+LSIRD  DE DDALVIY L
Subjt:  SALQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL

A0A6J5Y667 GRF-type domain-containing protein5.2e-4160Show/hide
Query:  EESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELTLELSA
        E+S L+C CG+PAKLR+SQT KNPFRLFYNCPK IS QC FF W+DEP P  DR  +E +LIR+ CIRL E   EI+ E + E+ EW REK+ELT +LS 
Subjt:  EESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELTLELSA

Query:  LQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL
        LQ++LD +  RI+M NES  MPP D LSI D  D+DDDALV++ +
Subjt:  LQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein3.0e-0442.22Show/hide
Query:  NLECYCGV-PAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADE
        ++ C C   P     S+TEKNP R FY CP      CG+F W D+
Subjt:  NLECYCGV-PAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADE

AT3G42860.1 zinc knuckle (CCHC-type) family protein1.3e-0452.38Show/hide
Query:  CYCGVPAKLRM-SQTEKNPFRLFYNCP-KEISQQCGFFHWAD
        C CGV   L + S T KNP R FY CP +E +  CGFF W D
Subjt:  CYCGVPAKLRM-SQTEKNPFRLFYNCP-KEISQQCGFFHWAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTGAACGTTCATGAGGAATCTAATCTTGAATGTTACTGTGGAGTGCCTGCCAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTCTACAACTG
TCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAACCTGAACCATTTGATGATAGACACGCTAACGAACTAGACTTGATCCGCAACGTGTGCATTC
GTCTAACAGAAATATTTGAGGAAATCGAAGGGGAGCACGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTAGAACTATCAGCTCTGCAGACTCAG
CTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCCTTTTCAATGCCTCCTTTTGATTCACTTTCCATCAGGGACGACGAGGATGAGGATGATGATGCATTAGT
TATATATAATTTGTAA
mRNA sequenceShow/hide mRNA sequence
GTCTTGCAATGAAATGATGTCATTGTCAAAATAGAAACGAGCATACCGAGAAACTAAGGTAAGTTGAGGGATAAGATTAGTGTCATAGTCAAGAAGAAAAGAGGAGAAAA
AACGCTACAAAACAAAGAAGATTCCGATCACCTTAGGAAGTGCTTTTGGGTTTGGCCCCCACACGATAAGCTTCAAACTCCTCGATCTCTTCATTTACGGACACTCGTCG
TTCGTTGTATCAATGCGACGGCGATCTTCCTTTGCTGCTTCAATCGGTTGCTCCAATTTGCCAACCGCGCTCTTTTAGGATCCATACTTGAACAATGTCTTTGAACGTTC
ATGAGGAATCTAATCTTGAATGTTACTGTGGAGTGCCTGCCAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTCTACAACTGTCCAAAGGAGATATCT
CAACAATGTGGTTTCTTTCATTGGGCTGATGAACCTGAACCATTTGATGATAGACACGCTAACGAACTAGACTTGATCCGCAACGTGTGCATTCGTCTAACAGAAATATT
TGAGGAAATCGAAGGGGAGCACGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTAGAACTATCAGCTCTGCAGACTCAGCTTGATGATATTCATA
ATAGAATAAGGATGACGAATGAATCCTTTTCAATGCCTCCTTTTGATTCACTTTCCATCAGGGACGACGAGGATGAGGATGATGATGCATTAGTTATATATAATTTGTAA
ATAAATTATTGTAAATTATATCGAGTGAAGTGAGGGATGATGTAAAAAATATTTAAGCTATCTATTTTCGGTACGTGTTTAAGCTTTTATTTAGAAGTTATGGTTTTTCC
ATTAATTTTCTTCCTAGTTTGAGGGATGGATGACTCCCCAGAAAATGCTA
Protein sequenceShow/hide protein sequence
MSLNVHEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPFDDRHANELDLIRNVCIRLTEIFEEIEGEHEDEKAEWEREKAELTLELSALQTQ
LDDIHNRIRMTNESFSMPPFDSLSIRDDEDEDDDALVIYNL