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CcUC02G024210 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G024210
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionclassical arabinogalactan protein 9
Genome locationCicolChr02:7560405..7563719
RNA-Seq ExpressionCcUC02G024210
SyntenyCcUC02G024210
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR044981 - Lysine-rich arabinogalactan protein AGP9/17/18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645846.1 hypothetical protein Csa_017309 [Cucumis sativus]2.1e-4672.86Show/hide
Query:  MMDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPPASPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPP
        MMD +ALLCFT ISIAF +A AQSP+S PT TP+PPTT+TPP  ++PPP + PPPASPPPA+PPPA+PPPATPPPA+PPPA+PPPA+PPPA+PPPATPPP
Subjt:  MMDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPPASPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPP

Query:  ATPPPATPPPATPPSAPTTSPPAAVP------------APGLSPVSSPPAPAMEAPGPAGP-ESPTPSQNDNSGVEKVWRKETMVGSILIGMGYVFMML
        A+P    PPPATPP AP  SPP AVP            AP  SPVSSPPAP++EAPGPAGP +SPTPSQNDNSGVEKVWRKE+MVGSI+IGMGYVF+ML
Subjt:  ATPPPATPPPATPPSAPTTSPPAAVP------------APGLSPVSSPPAPAMEAPGPAGP-ESPTPSQNDNSGVEKVWRKETMVGSILIGMGYVFMML

KAG6571935.1 hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sororia]9.2e-5073.02Show/hide
Query:  MDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSA--------------------PPPASPPPATPPPATPPPATPPPATPPPA
        MD QAL C T ISIAFAVAGAQ P+S PT TPAPPTTTT P  ATPPPVSA                    PPPASPPPATPPPA+PPPATPPPA+PPPA
Subjt:  MDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSA--------------------PPPASPPPATPPPATPPPATPPPATPPPA

Query:  TPPPATPPPATPPPATPPPATPPPATPPPATPPSAPTTSPPAAVP-----------APGLSPVSSPPAPAMEAPGPAGPESPTPSQNDNSGVEKVWRKET
        TPPPA+PPPATPPPA+PPPATPPPATPPPATPP AP  SPPAAVP           APG +PVSSPP P+ E PGPAGPESPTPSQNDNSGVEK WRKET
Subjt:  TPPPATPPPATPPPATPPPATPPPATPPPATPPSAPTTSPPAAVP-----------APGLSPVSSPPAPAMEAPGPAGPESPTPSQNDNSGVEKVWRKET

Query:  MVGSILIGMGYVFMM
        MVGS+LIGMGYV MM
Subjt:  MVGSILIGMGYVFMM

XP_004136948.3 classical arabinogalactan protein 9 [Cucumis sativus]2.1e-4672.86Show/hide
Query:  MMDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPPASPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPP
        MMD +ALLCFT ISIAF +A AQSP+S PT TP+PPTT+TPP  ++PPP + PPPASPPPA+PPPA+PPPATPPPA+PPPA+PPPA+PPPA+PPPATPPP
Subjt:  MMDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPPASPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPP

Query:  ATPPPATPPPATPPSAPTTSPPAAVP------------APGLSPVSSPPAPAMEAPGPAGP-ESPTPSQNDNSGVEKVWRKETMVGSILIGMGYVFMML
        A+P    PPPATPP AP  SPP AVP            AP  SPVSSPPAP++EAPGPAGP +SPTPSQNDNSGVEKVWRKE+MVGSI+IGMGYVF+ML
Subjt:  ATPPPATPPPATPPSAPTTSPPAAVP------------APGLSPVSSPPAPAMEAPGPAGP-ESPTPSQNDNSGVEKVWRKETMVGSILIGMGYVFMML

XP_008455018.1 PREDICTED: classical arabinogalactan protein 9 [Cucumis melo]8.6e-4872.46Show/hide
Query:  MMDRQA-LLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPP-------ASPPPATPPPATPPPATPPPATPPPATPPPATPPPAT
        MMD +A LLCFTFISIAFA+AGAQSP+S PT TP+PPTT+ PP  +TPPPVS+PPP       A+PPPA+PPPA+PPPA+PPPATPPPA+PPPA+PPPA+
Subjt:  MMDRQA-LLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPP-------ASPPPATPPPATPPPATPPPATPPPATPPPATPPPAT

Query:  PPPATPPPATPPPATPPPATPPSAPTTSPPAAVP------------APGLSPVSSPPAPAMEAPGPAGP-ESPTPSQNDNSGVEKVWRKETMVGSILIGM
        PPPA+PPPA+PPPA+PPPA PP AP  SPP AVP            APG +PVSSPPAP++EAPGPAGP +SPTPSQNDNSGVEKVWRKE+MVGSI+IGM
Subjt:  PPPATPPPATPPPATPPPATPPSAPTTSPPAAVP------------APGLSPVSSPPAPAMEAPGPAGP-ESPTPSQNDNSGVEKVWRKETMVGSILIGM

Query:  GYVFMML
        GYVF+ML
Subjt:  GYVFMML

XP_023553858.1 classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]7.8e-4974.63Show/hide
Query:  MDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVS----------APPPASPPPATPPPATPPPATPPPATPPPATPPPATPPPA
        MD QAL CFT ISIAFAVAGAQ P+S PT T APPTTTT P  ATPPPVS          +PPPA+PPPA+PPPATPPPA+PPPATPPPA+PPPATPPPA
Subjt:  MDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVS----------APPPASPPPATPPPATPPPATPPPATPPPATPPPATPPPA

Query:  TPPPATPPPATPPPATPPPATPPSAPTTSPPAAVP-----------APGLSPVSSPPAPAMEAPGPAGPESPTPSQNDNSGVEKVWRKETMVGSILIGMG
        +PPPATPPPA+PPPATPPPATPP  P  SPPAAVP           APG +PVSSPP P+ E PGPAGPESPTPSQNDNSGVEK WRKETMVGS+LIGMG
Subjt:  TPPPATPPPATPPPATPPPATPPSAPTTSPPAAVP-----------APGLSPVSSPPAPAMEAPGPAGPESPTPSQNDNSGVEKVWRKETMVGSILIGMG

Query:  YVFMM
        YV MM
Subjt:  YVFMM

TrEMBL top hitse value%identityAlignment
A0A0A0K6D8 Uncharacterized protein3.0e-4672.73Show/hide
Query:  MDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPPASPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPA
        MD +ALLCFT ISIAF +A AQSP+S PT TP+PPTT+TPP  ++PPP + PPPASPPPA+PPPA+PPPATPPPA+PPPA+PPPA+PPPA+PPPATPPPA
Subjt:  MDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPPASPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPA

Query:  TPPPATPPPATPPSAPTTSPPAAVP------------APGLSPVSSPPAPAMEAPGPAGP-ESPTPSQNDNSGVEKVWRKETMVGSILIGMGYVFMML
        +P    PPPATPP AP  SPP AVP            AP  SPVSSPPAP++EAPGPAGP +SPTPSQNDNSGVEKVWRKE+MVGSI+IGMGYVF+ML
Subjt:  TPPPATPPPATPPSAPTTSPPAAVP------------APGLSPVSSPPAPAMEAPGPAGP-ESPTPSQNDNSGVEKVWRKETMVGSILIGMGYVFMML

A0A1S3BZW9 classical arabinogalactan protein 94.2e-4872.46Show/hide
Query:  MMDRQA-LLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPP-------ASPPPATPPPATPPPATPPPATPPPATPPPATPPPAT
        MMD +A LLCFTFISIAFA+AGAQSP+S PT TP+PPTT+ PP  +TPPPVS+PPP       A+PPPA+PPPA+PPPA+PPPATPPPA+PPPA+PPPA+
Subjt:  MMDRQA-LLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPP-------ASPPPATPPPATPPPATPPPATPPPATPPPATPPPAT

Query:  PPPATPPPATPPPATPPPATPPSAPTTSPPAAVP------------APGLSPVSSPPAPAMEAPGPAGP-ESPTPSQNDNSGVEKVWRKETMVGSILIGM
        PPPA+PPPA+PPPA+PPPA PP AP  SPP AVP            APG +PVSSPPAP++EAPGPAGP +SPTPSQNDNSGVEKVWRKE+MVGSI+IGM
Subjt:  PPPATPPPATPPPATPPPATPPSAPTTSPPAAVP------------APGLSPVSSPPAPAMEAPGPAGP-ESPTPSQNDNSGVEKVWRKETMVGSILIGM

Query:  GYVFMML
        GYVF+ML
Subjt:  GYVFMML

A0A5A7SJX5 Classical arabinogalactan protein 94.2e-4872.46Show/hide
Query:  MMDRQA-LLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPP-------ASPPPATPPPATPPPATPPPATPPPATPPPATPPPAT
        MMD +A LLCFTFISIAFA+AGAQSP+S PT TP+PPTT+ PP  +TPPPVS+PPP       A+PPPA+PPPA+PPPA+PPPATPPPA+PPPA+PPPA+
Subjt:  MMDRQA-LLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPP-------ASPPPATPPPATPPPATPPPATPPPATPPPATPPPAT

Query:  PPPATPPPATPPPATPPPATPPSAPTTSPPAAVP------------APGLSPVSSPPAPAMEAPGPAGP-ESPTPSQNDNSGVEKVWRKETMVGSILIGM
        PPPA+PPPA+PPPA+PPPA PP AP  SPP AVP            APG +PVSSPPAP++EAPGPAGP +SPTPSQNDNSGVEKVWRKE+MVGSI+IGM
Subjt:  PPPATPPPATPPPATPPPATPPSAPTTSPPAAVP------------APGLSPVSSPPAPAMEAPGPAGP-ESPTPSQNDNSGVEKVWRKETMVGSILIGM

Query:  GYVFMML
        GYVF+ML
Subjt:  GYVFMML

A0A6J1GK65 classical arabinogalactan protein 9-like6.7e-4671.77Show/hide
Query:  MDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSA--------------PPPASPPPATPPPATPPPATPPPATPPPATPPPAT
        MD QAL CFT I +AFAVAGAQ P+S PT    P TTT PP  ATPPPVSA              PPPA+PPPA+PPPATPPPA+PPPA+PPPATPPPA+
Subjt:  MDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSA--------------PPPASPPPATPPPATPPPATPPPATPPPATPPPAT

Query:  PPPATPPPATPPPATPPPATPPPATPPSAPTTSPPAAVP-----------APGLSPVSSPPAPAMEAPGPAGPESPTPSQNDNSGVEKVWRKETMVGSIL
        PPPATPPPA+PPPATPPPATPPPATPP AP  SPPAAVP           APG +PVSSPP P+ E PGPAGPESPTPSQNDNSGVEK WRKETMVGS+L
Subjt:  PPPATPPPATPPPATPPPATPPPATPPSAPTTSPPAAVP-----------APGLSPVSSPPAPAMEAPGPAGPESPTPSQNDNSGVEKVWRKETMVGSIL

Query:  IGMGYVFMM
        IGMGYV MM
Subjt:  IGMGYVFMM

A0A6J1I8J9 classical arabinogalactan protein 9-like5.0e-3360.81Show/hide
Query:  MDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPP---------------------------TTTTPPSTATPPPVSAPPPASPPPATPPPATPPPATPP
        MD QAL CFT ISIAFAVAGAQ P+S PT TPAPP                                                   ATPPPA+PPPATPP
Subjt:  MDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPP---------------------------TTTTPPSTATPPPVSAPPPASPPPATPPPATPPPATPP

Query:  PATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPSAPTTSPPAAVP-----------APGLSPVSSPPAPAMEAPGPAGPESPTPSQNDNSGVE
        PA+PPPATPPPA+PPPATPPPA+PPPATPPPATPPPATPP AP  SPPAAVP           APG +PVSSPP P+ E PGPAGPESPTPSQNDNSGVE
Subjt:  PATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPSAPTTSPPAAVP-----------APGLSPVSSPPAPAMEAPGPAGPESPTPSQNDNSGVE

Query:  KVWRKETMVGSILIGMGYVFMM
        K WRKET++GS+LIGMGYV MM
Subjt:  KVWRKETMVGSILIGMGYVFMM

SwissProt top hitse value%identityAlignment
Q9C5S0 Classical arabinogalactan protein 91.2e-1254.27Show/hide
Query:  ALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPP--ASPPPAT--PPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPA
        A++C   I+    V G Q+P S PT TPAPPT TTPP  ATPPPVSAPPP   SPPP T  PPPA PP   PP ++PPPA+PPPATPPP   PP  PP A
Subjt:  ALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPP--ASPPPAT--PPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPA

Query:  TPPPATPPP-ATPPSAPTTSPPAAVPA---------PGLSPVSSPPAPAMEAPGPAGPE-SPTPSQ---NDNSGVEKVWRKETMVGSILIGMGYVFMML
        +PPPATPPP ATPP AP  SPPA VPA         P  SP SSPP P+ +APGP+    SP PS    ND +G  K      MV S++ G   V+ M+
Subjt:  TPPPATPPP-ATPPSAPTTSPPAAVPA---------PGLSPVSSPPAPAMEAPGPAGPE-SPTPSQ---NDNSGVEKVWRKETMVGSILIGMGYVFMML

Arabidopsis top hitse value%identityAlignment
AT2G14890.1 arabinogalactan protein 98.7e-1454.27Show/hide
Query:  ALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPP--ASPPPAT--PPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPA
        A++C   I+    V G Q+P S PT TPAPPT TTPP  ATPPPVSAPPP   SPPP T  PPPA PP   PP ++PPPA+PPPATPPP   PP  PP A
Subjt:  ALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPP--ASPPPAT--PPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPA

Query:  TPPPATPPP-ATPPSAPTTSPPAAVPA---------PGLSPVSSPPAPAMEAPGPAGPE-SPTPSQ---NDNSGVEKVWRKETMVGSILIGMGYVFMML
        +PPPATPPP ATPP AP  SPPA VPA         P  SP SSPP P+ +APGP+    SP PS    ND +G  K      MV S++ G   V+ M+
Subjt:  TPPPATPPP-ATPPSAPTTSPPAAVPA---------PGLSPVSSPPAPAMEAPGPAGPE-SPTPSQ---NDNSGVEKVWRKETMVGSILIGMGYVFMML

AT2G14890.2 arabinogalactan protein 91.3e-1258.93Show/hide
Query:  ALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPP--ASPPPAT--PPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPA
        A++C   I+    V G Q+P S PT TPAPPT TTPP  ATPPPVSAPPP   SPPP T  PPPA PP   PP ++PPPA+PPPATPPP   PP  PP A
Subjt:  ALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPP--ASPPPAT--PPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPA

Query:  TPPPATPPP-ATPPSAPTTSPPAAVPA---------PGLSPVSSPPAPAMEAPGPAGPE-SPTPSQND
        +PPPATPPP ATPP AP  SPPA VPA         P  SP SSPP P+ +APGP+    SP PS  D
Subjt:  TPPPATPPP-ATPPSAPTTSPPAAVPA---------PGLSPVSSPPAPAMEAPGPAGPE-SPTPSQND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGATCGTCAAGCTTTGTTGTGTTTCACTTTCATCTCCATTGCCTTCGCCGTCGCCGGAGCTCAGTCTCCCGCCAGTTCTCCCACCTACACCCCTGCTCCTCCCAC
CACCACCACCCCCCCTTCTACCGCCACTCCTCCCCCTGTTTCAGCTCCCCCTCCGGCATCCCCACCTCCGGCAACTCCCCCTCCGGCAACTCCTCCTCCGGCAACTCCCC
CTCCGGCTACTCCCCCTCCGGCAACTCCCCCTCCGGCTACTCCTCCTCCGGCAACTCCCCCTCCGGCCACTCCCCCACCGGCCACTCCTCCACCTGCAACGCCACCACCC
GCAACTCCACCGTCTGCACCAACGACATCCCCACCAGCAGCGGTTCCGGCTCCGGGCCTGTCCCCAGTTTCGAGCCCGCCGGCGCCGGCAATGGAAGCTCCAGGACCTGC
CGGCCCTGAATCTCCTACTCCGTCTCAGAACGACAATAGTGGAGTGGAGAAAGTTTGGAGAAAGGAGACCATGGTGGGGAGCATATTGATTGGAATGGGATATGTATTTA
TGATGCTTTAG
mRNA sequenceShow/hide mRNA sequence
GTCCTCCATTTCCTAATTCCTCTATTTATTCTCTCCTTATTTTGATTTCCTCTCTCAAACGTTCATCATCTTCTGAAGTGAAGAAGAAGAAAATGATGGATCGTCAAGCT
TTGTTGTGTTTCACTTTCATCTCCATTGCCTTCGCCGTCGCCGGAGCTCAGTCTCCCGCCAGTTCTCCCACCTACACCCCTGCTCCTCCCACCACCACCACCCCCCCTTC
TACCGCCACTCCTCCCCCTGTTTCAGCTCCCCCTCCGGCATCCCCACCTCCGGCAACTCCCCCTCCGGCAACTCCTCCTCCGGCAACTCCCCCTCCGGCTACTCCCCCTC
CGGCAACTCCCCCTCCGGCTACTCCTCCTCCGGCAACTCCCCCTCCGGCCACTCCCCCACCGGCCACTCCTCCACCTGCAACGCCACCACCCGCAACTCCACCGTCTGCA
CCAACGACATCCCCACCAGCAGCGGTTCCGGCTCCGGGCCTGTCCCCAGTTTCGAGCCCGCCGGCGCCGGCAATGGAAGCTCCAGGACCTGCCGGCCCTGAATCTCCTAC
TCCGTCTCAGAACGACAATAGTGGAGTGGAGAAAGTTTGGAGAAAGGAGACCATGGTGGGGAGCATATTGATTGGAATGGGATATGTATTTATGATGCTTTAGGAAGAAG
AAAGGGGTTGGACATAGTTGATATTATAATGTAATGGGTCATTTCTTCCTTCTGCAGTGCCCCCCTCTTTTTTGCTGTCTATGTGTTGCCTTTTTCATTATTCTTCATAT
TGGTTGCTCTATATTTTAGTTCACTTCGATTATTATTAGCCCATGTCTTGTTTGGGACTCTTGATTTATTATTATTAGCCTTTTGGGCTCTCTTTATATATATATATATA
TATATATATATATATATATATGATTACCCATTTGCTTGGGATTCTTTTGAGGTAAACAGCTTTTGTATCTACCCTATTTAGAGGGACTTGTTTTATGTTTTTAGTTTCAT
TATTATTGCTCAC
Protein sequenceShow/hide protein sequence
MMDRQALLCFTFISIAFAVAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPPASPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPP
ATPPSAPTTSPPAAVPAPGLSPVSSPPAPAMEAPGPAGPESPTPSQNDNSGVEKVWRKETMVGSILIGMGYVFMML