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CcUC02G024220 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G024220
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionGibberellin regulated protein
Genome locationCicolChr02:7587326..7588917
RNA-Seq ExpressionCcUC02G024220
SyntenyCcUC02G024220
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044354.1 peamaclein-like [Cucumis melo var. makuwa]1.1e-1652.87Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++F      CFLL ++SF+DT  A    C + C+KRCS+A +K RCMKYC ICC  CKCVP G+YG KH CPCY  + + +GR KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

KAE8008067.1 hypothetical protein FH972_004614 [Carpinus fangiana]1.4e-1659.26Show/hide
Query:  LFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        L  C LLLS+SF++  MA S  CT  C  RCSKA +K RCMKYC ICC +CKCVP G+YG KH CPCY      +G+AKCP
Subjt:  LFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

KAG6588701.1 Snakin-1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2886.57Show/hide
Query:  MDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP
        M+TAMA +DVCTRPCRKRCS AKLKR+CMK+CRICC KCKCVPG+YGK HCPCYSHVHTLRGRAKCP
Subjt:  MDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP

KAG7022485.1 Snakin-1 [Cucurbita argyrosperma subsp. argyrosperma]2.1e-3682.95Show/hide
Query:  MRTQIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP
        MR QI ++G F CFLLLSASFM+TAMA +DVCTRPCRKRCS AKLKR+CMK+CRICC KCKCVPG+YGK HCPCYSHVHTLRGRAKCP
Subjt:  MRTQIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP

XP_021683427.1 snakin-1-like [Hevea brasiliensis]4.9e-1754.02Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++F   L  C LLLS+SF++ AMA S  CT+ C+ RC+KA +K RC+KYC ICC++CKCVP G+YG KH CPCY      +G+ KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

TrEMBL top hitse value%identityAlignment
A0A0A0K2Z1 Uncharacterized protein5.2e-4192.05Show/hide
Query:  MRTQIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP
        MRT + LLGLFFCFLLLSASFMDTAMADSD CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPG YGK HCPCYSHVHT+RGRAKCP
Subjt:  MRTQIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP

A0A1S4CE27 peamaclein-like1.5e-1652.87Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        +IF+  +    LLL++SF++TA A S  C R C+ RCSKA +K RC+KYC +CC+KCKCVP G+YG KH CPCY  +   +G+ KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

A0A2I0KSA4 peamaclein-like3.4e-1652.38Show/hide
Query:  LLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        L  +  C  LLS++FM+  MA S  CT+ C +RC KA +K RC+KYC ICC++CKCVP G+YG KH CPCY      +G+ KCP
Subjt:  LLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

A0A5D3E0A6 Peamaclein-like5.3e-1752.87Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++F      CFLL ++SF+DT  A    C + C+KRCS+A +K RCMKYC ICC  CKCVP G+YG KH CPCY  + + +GR KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

A0A5N6QLL9 Uncharacterized protein6.9e-1759.26Show/hide
Query:  LFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        L  C LLLS+SF++  MA S  CT  C  RCSKA +K RCMKYC ICC +CKCVP G+YG KH CPCY      +G+AKCP
Subjt:  LFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

SwissProt top hitse value%identityAlignment
C0HLQ1 Cypmaclein2.4e-1152.54Show/hide
Query:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGSYG-KHHCPCYSHVHTLRGRAKCP
        C + C +RCSKA    RC+KYC ICC KC CV PG+YG +  CPCY+++   +G  KCP
Subjt:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGSYG-KHHCPCYSHVHTLRGRAKCP

O80641 Gibberellin-regulated protein 86.4e-1244.83Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++ ++  F   LLL++SF   + ADS  C   C  RCSKA     C+KYC ICC KC CVP G++G K  CPCY  +   +G +KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

P86888 Peamaclein2.4e-1153.23Show/hide
Query:  SDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        S  C   C  RCSKA  + RC+KYC ICC KC CVP G+YG K  CPCY  +   +G  KCP
Subjt:  SDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

Q8LFM2 Gibberellin-regulated protein 102.2e-1249.35Show/hide
Query:  LLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCK-CVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        LL+++S    + ADS  C   C  RCSKA  + RC+KYC ICC KC  CVP G+YG K  CPCY  +   +G +KCP
Subjt:  LLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCK-CVP-GSYG-KHHCPCYSHVHTLRGRAKCP

Q948Z4 Snakin-15.1e-1750.57Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++FLL L    L+++ S + T MA S  C   C+ RCSKA L  RC+KYC ICC +CKCVP G+YG KH CPCY      +G++KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

Arabidopsis top hitse value%identityAlignment
AT2G14900.1 Gibberellin-regulated family protein4.3e-1150.85Show/hide
Query:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        C + C  RC +A +K RC+KYC ICC  C+CVP G+YG KH C CY    + +G  KCP
Subjt:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

AT2G39540.1 Gibberellin-regulated family protein4.5e-1344.83Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++ ++  F   LLL++SF   + ADS  C   C  RCSKA     C+KYC ICC KC CVP G++G K  CPCY  +   +G +KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

AT4G09600.1 GAST1 protein homolog 36.1e-1038.95Show/hide
Query:  RTQIFLLGLFFC---FLLLSASFMDTAMADSDV---CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGSYGKHH-CPCYSHVHTLRGRAKCP
        R+ + LL + FC   F L   +  D+ + +  V   C   C+ RCSK+     C++ C  CC +C CV PG+ G HH CPCY+ + T  GR KCP
Subjt:  RTQIFLLGLFFC---FLLLSASFMDTAMADSDV---CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGSYGKHH-CPCYSHVHTLRGRAKCP

AT4G09610.1 GAST1 protein homolog 21.0e-0947.46Show/hide
Query:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGSYGKHH-CPCYSHVHTLRGRAKCP
        C   C+ RCSK+   + C++ C  CCS+C CV PG+ G  H CPCY+ + T  GR KCP
Subjt:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGSYGKHH-CPCYSHVHTLRGRAKCP

AT5G59845.1 Gibberellin-regulated family protein1.6e-1349.35Show/hide
Query:  LLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCK-CVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        LL+++S    + ADS  C   C  RCSKA  + RC+KYC ICC KC  CVP G+YG K  CPCY  +   +G +KCP
Subjt:  LLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCK-CVP-GSYG-KHHCPCYSHVHTLRGRAKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAACTCAGATTTTTCTTCTCGGTTTGTTCTTCTGTTTTCTTCTCTTAAGTGCTTCTTTCATGGACACCGCCATGGCCGACTCTGATGTATGCACAAGACCGTGCAG
GAAGAGGTGCTCGAAAGCGAAGCTGAAGCGTCGGTGCATGAAGTACTGTAGAATATGTTGTAGTAAATGCAAGTGTGTGCCAGGGAGTTATGGCAAGCACCATTGCCCTT
GCTATAGCCATGTTCACACCCTTAGGGGTAGGGCCAAGTGCCCTTAA
mRNA sequenceShow/hide mRNA sequence
CGCGCTTGGATTTATGAATTGAGTTTAGAATTCTCCAACACTCTCTCTCTGTTTCTTGTTTAAAAGCACTTACTCCACAAACTCCTTTGTGCTTTGTTGAGAAACAAATC
TGAGATTTCATTTCTCTAATCTGAAAGATCAAAGATGAGAACTCAGATTTTTCTTCTCGGTTTGTTCTTCTGTTTTCTTCTCTTAAGTGCTTCTTTCATGGACACCGCCA
TGGCCGACTCTGATGTATGCACAAGACCGTGCAGGAAGAGGTGCTCGAAAGCGAAGCTGAAGCGTCGGTGCATGAAGTACTGTAGAATATGTTGTAGTAAATGCAAGTGT
GTGCCAGGGAGTTATGGCAAGCACCATTGCCCTTGCTATAGCCATGTTCACACCCTTAGGGGTAGGGCCAAGTGCCCTTAATTTTAAGACCATTTATTGTCCCTTGTAAA
ACAAACCACCTAAATATTATTTATTACAAGGACACCAATAATTTTGTGTCTCAATTAAATATTAATGCTTCAAAGTTTGAATGTGAGGTTTGGTATGTTTTTCAATACAC
CATGTGTATTTATGAGATCTACCTTATTTTATTTCAT
Protein sequenceShow/hide protein sequence
MRTQIFLLGLFFCFLLLSASFMDTAMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP