; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G024240 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G024240
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionSWIB domain-containing protein
Genome locationCicolChr02:7609944..7612216
RNA-Seq ExpressionCcUC02G024240
SyntenyCcUC02G024240
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571933.1 hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sororia]7.7e-5986.23Show/hide
Query:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGEP LLVA A    SSVKHP QLPLPNLRF+RT+TFASASNQ TAS RQPRGIMKPRR+SPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+I+CDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

XP_022952608.1 uncharacterized protein LOC111455244 [Cucurbita moschata]3.5e-5986.96Show/hide
Query:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGEP LLVA A    SSVKHP QLPLPNLRF+RT+TFASASNQ TAS RQPRGIMKPRR+SPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+IICDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

XP_022972543.1 uncharacterized protein LOC111471082 [Cucurbita maxima]1.3e-5886.96Show/hide
Query:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGE  LL+A A    SSVKHP QLPLPNLRF+RT+TFASASNQATAS RQPRGIMKPRR+SPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+I+CDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

XP_023553864.1 uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]3.5e-5986.96Show/hide
Query:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGEP LLVA A    SSVKHP QLPLPNLRF+RT+TFASASNQ TAS RQPRGIMKPRR+SPEMQALVGAPEISRTQALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KP+DKK+IICDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

XP_038888173.1 uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida]7.4e-6292.03Show/hide
Query:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAF+STFISGEP LLV  A  TA+SVK P QLPLPNLRFARTVTFASASNQATAS RQPRGIMKPRR+SPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

TrEMBL top hitse value%identityAlignment
A0A6J1D4Q4 uncharacterized protein LOC1110172911.1e-5573.1Show/hide
Query:  SNWSFSSYRSYRF-TFALSIFRTQKHNLSSLPAMAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRR
        S +  S  RS+RF TFALS+  T   +L    AMAFVSTF SGEP LLVA A  +ASS+KH  QLP  NLRF R VTFA+AS+QATASRR+PRGIMKPR 
Subjt:  SNWSFSSYRSYRF-TFALSIFRTQKHNLSSLPAMAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRR

Query:  VSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        +SPEMQALVG PEISRTQALKVIW HIKEHNLQ+P +KK+I+CDEKLK IFGGKDEVGFL+IAGLISPHFL
Subjt:  VSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

A0A6J1EIX1 uncharacterized protein LOC1114346991.2e-5786.96Show/hide
Query:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTFISGE  LL   A  T SSVKHP Q P  NL FARTVTFAS SNQATAS+RQPRGIMKP+R+SPEMQALVG PEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

A0A6J1GL33 uncharacterized protein LOC1114552441.7e-5986.96Show/hide
Query:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGEP LLVA A    SSVKHP QLPLPNLRF+RT+TFASASNQ TAS RQPRGIMKPRR+SPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+IICDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

A0A6J1IAA1 uncharacterized protein LOC1114710826.4e-5986.96Show/hide
Query:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGE  LL+A A    SSVKHP QLPLPNLRF+RT+TFASASNQATAS RQPRGIMKPRR+SPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+I+CDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

A0A6J1JNZ3 uncharacterized protein LOC1114861977.0e-5886.96Show/hide
Query:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTFISGE  LL   A  T+SSVKHP Q P  NL FARTVTFAS SNQATAS+RQPRGIMKP+R+SPEMQALVG PEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp279.0e-1045.45Show/hide
Query:  KPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF
        KP ++SP++   +G  ++SR Q +K +W +IK H+LQ P+DK+ I+CD+KLK++F
Subjt:  KPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF

Q05024 Protein TRI16.9e-1050Show/hide
Query:  VSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGK
        +S  +Q  +G+ E+ RTQ +K+IW +IKEH+LQ P D++ I+CDEK++ IFG K
Subjt:  VSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGK

Q08747 Upstream activation factor subunit UAF302.9e-0848.08Show/hide
Query:  VSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFG
        +S  + +L+G  E++RT+ ++ +WA+IK HNLQ P++KK I+CDEKL+ I G
Subjt:  VSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFG

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein3.7e-1946.39Show/hide
Query:  RTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF
        RT+   +A+ +A     + +GI K R VS ++ +  G  E++R  ALK +W ++K HNLQ P++KK I CD+KLK IF GKD+VG  EI  L+SPHF
Subjt:  RTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF

AT2G14880.1 SWIB/MDM2 domain superfamily protein2.9e-3265.42Show/hide
Query:  PLPNLRFARTVTFASASNQATA-SRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAG
        P   LR  R VT A+ S++ TA ++R PRGIMKPR VSPEMQ +V  PEI+RTQALK IWA+IKEH+LQ P +K+ I+CDEKLK IF G+D VGFLEIA 
Subjt:  PLPNLRFARTVTFASASNQATA-SRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAG

Query:  LISPHFL
        LI PHFL
Subjt:  LISPHFL

AT2G35605.1 SWIB/MDM2 domain superfamily protein8.3e-1948.45Show/hide
Query:  RTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF
        R +   +AS+    + RQ  GI+K   VS  +   +G  E+SRT A+K IW +IK +NLQ P +K+ I+CDE+LK IF GKD VGFLEI+ L+S HF
Subjt:  RTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF

AT3G03590.1 SWIB/MDM2 domain superfamily protein4.4e-2041.67Show/hide
Query:  LSSLPAMAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHI
        +SS+ AM F        P      +  +A S K P   P      A+    A + + A  + R   GI K   VSP +   +G  E SRT A+K IW +I
Subjt:  LSSLPAMAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHI

Query:  KEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        K H+LQ P+DK+ I CDE LK IF GKD+VGFLEI+ L+SPHF+
Subjt:  KEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

AT4G34290.1 SWIB/MDM2 domain superfamily protein2.5e-3158.73Show/hide
Query:  PTASSVKHPCQLPL-----PNLRFARTVTFASASNQ---ATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDE
        P  SS+  P  L L      NLR  R VT A+A++     T   R+PRGIMKPR VS  MQ +VG PEI RTQALK IWA+IKEH+LQ P +K+ I+CDE
Subjt:  PTASSVKHPCQLPL-----PNLRFARTVTFASASNQ---ATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDE

Query:  KLKNIFGGKDEVGFLEIAGLISPHFL
        KLK IF GK+ VGFLEIA LI PHFL
Subjt:  KLKNIFGGKDEVGFLEIAGLISPHFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCAAATTGGAGCTTCTCGAGTTATCGGTCTTACCGCTTCACCTTCGCTTTATCCATTTTTCGAACGCAAAAACACAACCTATCGTCACTTCCGGCCATG
GCTTTCGTCTCCACCTTCATCTCCGGCGAACCGCCCCTCCTTGTCGCCATAGCCTTCCCCACCGCCTCCTCTGTCAAGCATCCCTGTCAACTGCCTCTGCCTAAT
TTGCGCTTCGCCCGCACCGTCACCTTCGCTTCCGCCTCCAACCAAGCCACTGCCTCCCGCCGGCAGCCCCGTGGCATCATGAAGCCCCGTAGAGTTTCGCCGGAG
ATGCAGGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACCCAAGCCCTGAAGGTCATTTGGGCTCACATTAAAGAACATAATCTTCAGAAACCTAGCGACAAGAAA
GTCATAATTTGTGACGAGAAGCTGAAGAATATATTTGGAGGGAAAGATGAAGTTGGATTTCTGGAGATTGCAGGGTTAATAAGTCCACACTTTCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTATCAAATTGGAGCTTCTCGAGTTATCGGTCTTACCGCTTCACCTTCGCTTTATCCATTTTTCGAACGCAAAAACACAACCTATCGTCACTTCCGGCCATG
GCTTTCGTCTCCACCTTCATCTCCGGCGAACCGCCCCTCCTTGTCGCCATAGCCTTCCCCACCGCCTCCTCTGTCAAGCATCCCTGTCAACTGCCTCTGCCTAAT
TTGCGCTTCGCCCGCACCGTCACCTTCGCTTCCGCCTCCAACCAAGCCACTGCCTCCCGCCGGCAGCCCCGTGGCATCATGAAGCCCCGTAGAGTTTCGCCGGAG
ATGCAGGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACCCAAGCCCTGAAGGTCATTTGGGCTCACATTAAAGAACATAATCTTCAGAAACCTAGCGACAAGAAA
GTCATAATTTGTGACGAGAAGCTGAAGAATATATTTGGAGGGAAAGATGAAGTTGGATTTCTGGAGATTGCAGGGTTAATAAGTCCACACTTTCTATAATGATTT
GAAGAATGGAAGATAGGCATCTGGGACCTTCAGTTCAGTCCATGAAGATGAACTTTCTTTTTTTTTTTTTTTTTTTTTTTGTGAGACTCTCTCAACTCAGGTATT
GCTCACTGAATCCTGTAGTTCAGAGCCCACTTTATGTTTAGTAGTTGGATAGAGAGAAAGAAGGCTTTGTAAGAACTTTGTTTGGAGGTTTATGTAGGGATTGTT
ATATGGAAATCTTTGGCTAGTAGTTATTAGTTTTTGGGTAAAATGTCTCACTTTTGTATTCGACCTGCTTGATTTTTGTGCTTCTATTTGCCCTGGTCTTGATGA
TTTTAGCTGTTGTTAATGAAATTGTATGATTTCAACACTATCCATAAAGCTACTTCGTCTTTTTG
Protein sequenceShow/hide protein sequence
MVSNWSFSSYRSYRFTFALSIFRTQKHNLSSLPAMAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPE
MQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL