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CcUC02G024320 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G024320
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description40S ribosomal protein S29
Genome locationCicolChr02:7671323..7672978
RNA-Seq ExpressionCcUC02G024320
SyntenyCcUC02G024320
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EAZ20624.1 hypothetical protein OsJ_36239 [Oryza sativa Japonica Group]1.4e-1856.82Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC--CSGVE---------------TPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP
        MGHSNVWNSHPKNYGPGSR C  CS +                +PG+ + SW DQ+VR HVLQTVLPQQRQG+ +HQVPL    F  P
Subjt:  MGHSNVWNSHPKNYGPGSRTC--CSGVE---------------TPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP

EMS47835.1 hypothetical protein TRIUR3_23452 [Triticum urartu]1.1e-0744.59Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCCSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQG-----NWIHQVPLNGQIFV
        +GHSNVWNSHP NYG GS  C        LW+ +W D +VR  VLQ V PQQR+       W++ V +   +F+
Subjt:  MGHSNVWNSHPKNYGPGSRTCCSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQG-----NWIHQVPLNGQIFV

KHN30432.1 hypothetical protein glysoja_033170 [Glycine soja]1.5e-1565.08Show/hide
Query:  MGHSNVWNSHPKNYGPGSRT--CCSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQV
        MGHSNVWNSHPKNYGPGSRT       + P +W+SSW+DQ++  +VLQ VLP+Q QGNW+HQV
Subjt:  MGHSNVWNSHPKNYGPGSRT--CCSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQV

XP_037477571.1 uncharacterized protein LOC119354910 isoform X2 [Triticum dicoccoides]5.0e-0857.41Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCCSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQ
        +GHSNVWNSHPKNYG GS  C        LW+ +W D +VR  VLQ V PQQR+
Subjt:  MGHSNVWNSHPKNYGPGSRTCCSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQ

XP_037477572.1 uncharacterized protein LOC119354910 isoform X3 [Triticum dicoccoides]5.0e-0857.41Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCCSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQ
        +GHSNVWNSHPKNYG GS  C        LW+ +W D +VR  VLQ V PQQR+
Subjt:  MGHSNVWNSHPKNYGPGSRTCCSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQ

TrEMBL top hitse value%identityAlignment
A0A0B2RF08 Uncharacterized protein7.1e-1665.08Show/hide
Query:  MGHSNVWNSHPKNYGPGSRT--CCSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQV
        MGHSNVWNSHPKNYGPGSRT       + P +W+SSW+DQ++  +VLQ VLP+Q QGNW+HQV
Subjt:  MGHSNVWNSHPKNYGPGSRT--CCSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQV

A0A0E0JAX2 Uncharacterized protein1.2e-1856.82Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC--CSGVE---------------TPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP
        MGHSNVWNSHPKNYGPGSR C  CS +                +PG+ + SW DQ+VR HVLQTVLPQQRQG+ +HQVPL    F  P
Subjt:  MGHSNVWNSHPKNYGPGSRTC--CSGVE---------------TPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP

A0A0E0RHR1 Uncharacterized protein6.8e-1956.82Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC--CSGVE---------------TPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP
        MGHSNVWNSHPKNYGPGSR C  CS +                +PG+ + SW DQ+VR HVLQTVLPQQRQG+ +HQVPL    F  P
Subjt:  MGHSNVWNSHPKNYGPGSRTC--CSGVE---------------TPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP

A0A4D9BYH1 Small subunit ribosomal protein S29e2.6e-1869.12Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC----CSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLN
        MGHSN+WNSHPKNYGPGSRTC     S    P + KSSW +QKV  +VLQTVLPQQ +GNW+HQVPLN
Subjt:  MGHSNVWNSHPKNYGPGSRTC----CSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLN

A3CHR1 Uncharacterized protein6.8e-1956.82Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC--CSGVE---------------TPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP
        MGHSNVWNSHPKNYGPGSR C  CS +                +PG+ + SW DQ+VR HVLQTVLPQQRQG+ +HQVPL    F  P
Subjt:  MGHSNVWNSHPKNYGPGSRTC--CSGVE---------------TPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP

SwissProt top hitse value%identityAlignment
Q5I7K3 40S ribosomal protein S293.2e-0590.48Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC
        MGHSNVWNSHPKNYG GSR C
Subjt:  MGHSNVWNSHPKNYGPGSRTC

Q680P8 40S ribosomal protein S292.4e-0590.48Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC
        MGHSNVWNSHPK YGPGSR C
Subjt:  MGHSNVWNSHPKNYGPGSRTC

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein1.7e-0690.48Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC
        MGHSNVWNSHPK YGPGSR C
Subjt:  MGHSNVWNSHPKNYGPGSRTC

AT3G44010.1 Ribosomal protein S14p/S29e family protein1.7e-0690.48Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC
        MGHSNVWNSHPK YGPGSR C
Subjt:  MGHSNVWNSHPKNYGPGSRTC

AT4G33865.1 Ribosomal protein S14p/S29e family protein1.7e-0690.48Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC
        MGHSNVWNSHPK YGPGSR C
Subjt:  MGHSNVWNSHPKNYGPGSRTC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAACTACGGCCCTGGCTCTCGCACCTGTTGTAGTGGTGTTGAAACGCCGGGTTTGTGGAAATCCTCATGGGTTGA
TCAGAAAGTACGGACTCATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGTACCGCTAAATGGCCAAATTTTTGTCTCTCCCATTAGAG
AAGAATATGTAATGGATGGATTATGGTAG
mRNA sequenceShow/hide mRNA sequence
GAGCACTCTACTATAAATACCTACTTTTTCTTCTTGTTGGTTCTTCAGAAAGCATTTGCCTCTTCCAAGGATTTTCGAAGCCCTAACGAGCTCATCAGATTTCCTTCTCG
CAAGAAATCCAAACATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAACTACGGCCCTGGCTCTCGCACCTGTTGTAGTGGTGTTGAAACGCCGGGTTTGTGGAAA
TCCTCATGGGTTGATCAGAAAGTACGGACTCATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGTACCGCTAAATGGCCAAATTTTTGT
CTCTCCCATTAGAGAAGAATATGTAATGGATGGATTATGGTAGCAGGAACCTTCAACTTCCATTTTATGTCCCTAGTTCACTTTTTCCTTGAACCTTGAGTTGATTGTTG
AACTTTAGGCTACTTCAATGTTTACTAATTTTGAAGATTTAAGTTAATGTTGTTCATTTGGTAGCTCGCTCTTAATTTTTTACCCCCGTTTCCTTAATTCTTTATCAGAT
GGTAACATCTCCTTATT
Protein sequenceShow/hide protein sequence
MGHSNVWNSHPKNYGPGSRTCCSGVETPGLWKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSPIREEYVMDGLW