; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G025200 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G025200
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionbinding partner of ACD11 1-like
Genome locationCicolChr02:9734606..9740797
RNA-Seq ExpressionCcUC02G025200
SyntenyCcUC02G025200
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034360 - Vip1-like, RNA recognition motif, plant
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652335.1 hypothetical protein Csa_022102 [Cucumis sativus]3.4e-13487.13Show/hide
Query:  ILSFKLPPTSNLYNFLSLSLQ---EIPRVLRSLAMQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATI
        + +F LP       F+ L ++   +  +    L  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCE+GESKTAFVTF DPKALEIALLLSGATI
Subjt:  ILSFKLPPTSNLYNFLSLSLQ---EIPRVLRSLAMQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATI

Query:  VDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSF
        VD+IVSI+PAENHVPRREMQEVRV DNAACLTPTENN PSIEDS SQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKH+L ASASAKVLSF
Subjt:  VDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSF

Query:  DRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPP
        DRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTA AAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPP
Subjt:  DRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPP

Query:  VVA
        VVA
Subjt:  VVA

XP_004151849.1 binding partner of ACD11 1 [Cucumis sativus]3.4e-13496.27Show/hide
Query:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE
        QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCE+GESKTAFVTF DPKALEIALLLSGATIVD+IVSI+PAENHVPRREMQEVRV DNAACLTPTE
Subjt:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE

Query:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
        NN PSIEDS SQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKH+L ASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
Subjt:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM

Query:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
        AAIFAAERKLNDTGSAVKTSKYVTA AAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
Subjt:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA

XP_008462804.1 PREDICTED: binding partner of ACD11 1-like [Cucumis melo]6.3e-13395.52Show/hide
Query:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE
        QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCE+GESKTAFVTF DPKALEIALLLSGATIVD+IVSI+PAENHVPRRE+QEVRV DNAACLTPTE
Subjt:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE

Query:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
        NN PS EDS SQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKH+L ASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
Subjt:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM

Query:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
        AAIFAAERKLNDTGSAVKTSKYVTA AAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
Subjt:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA

XP_022154555.1 binding partner of ACD11 1 [Momordica charantia]4.2e-12993.28Show/hide
Query:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE
        +TRTVQV HVSDLATEREIHEFFSFSGEIEHIEIQCE G+SKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVP+RE+QEVRVVDNAACLT TE
Subjt:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE

Query:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
        NN PS EDS SQPS G+MYVNRAQEVVA+VLAKGSAIGQDAMNKAKAFDEKHRL ASAS KVLSFDRRVGLTEKLTVGISVVNEKVKSVDQ+LHVSDKTM
Subjt:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM

Query:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
        AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAG+KTREKFHLAMSNL SKEPPVVA
Subjt:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA

XP_038881171.1 binding partner of ACD11 1-like isoform X2 [Benincasa hispida]7.0e-13295.52Show/hide
Query:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE
        QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCE+G+SKTAFVTFRDPKALEIALLLSGATIVDQIVSIS AENHVPRREMQEVRVVDNAACLTPTE
Subjt:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE

Query:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
        NNFPS EDS SQPSSGKMYVNRAQ VVATVLAKGSAIGQDAMNKAKAFDEKH+L ASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQ LHVSDKTM
Subjt:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM

Query:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
        AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNL SKE  VVA
Subjt:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA

TrEMBL top hitse value%identityAlignment
A0A0A0LNE8 RRM domain-containing protein1.6e-13496.27Show/hide
Query:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE
        QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCE+GESKTAFVTF DPKALEIALLLSGATIVD+IVSI+PAENHVPRREMQEVRV DNAACLTPTE
Subjt:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE

Query:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
        NN PSIEDS SQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKH+L ASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
Subjt:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM

Query:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
        AAIFAAERKLNDTGSAVKTSKYVTA AAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
Subjt:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA

A0A1S3CIA3 binding partner of ACD11 1-like3.1e-13395.52Show/hide
Query:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE
        QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCE+GESKTAFVTF DPKALEIALLLSGATIVD+IVSI+PAENHVPRRE+QEVRV DNAACLTPTE
Subjt:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE

Query:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
        NN PS EDS SQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKH+L ASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
Subjt:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM

Query:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
        AAIFAAERKLNDTGSAVKTSKYVTA AAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
Subjt:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA

A0A5D3BPG7 Binding partner of ACD11 1-like3.1e-13395.52Show/hide
Query:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE
        QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCE+GESKTAFVTF DPKALEIALLLSGATIVD+IVSI+PAENHVPRRE+QEVRV DNAACLTPTE
Subjt:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE

Query:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
        NN PS EDS SQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKH+L ASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
Subjt:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM

Query:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
        AAIFAAERKLNDTGSAVKTSKYVTA AAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
Subjt:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA

A0A6J1DJX5 binding partner of ACD11 12.1e-12993.28Show/hide
Query:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE
        +TRTVQV HVSDLATEREIHEFFSFSGEIEHIEIQCE G+SKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVP+RE+QEVRVVDNAACLT TE
Subjt:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE

Query:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
        NN PS EDS SQPS G+MYVNRAQEVVA+VLAKGSAIGQDAMNKAKAFDEKHRL ASAS KVLSFDRRVGLTEKLTVGISVVNEKVKSVDQ+LHVSDKTM
Subjt:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM

Query:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
        AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAG+KTREKFHLAMSNL SKEPPVVA
Subjt:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA

A0A6J1IKN1 binding partner of ACD11 17.8e-12992.16Show/hide
Query:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE
        QTRTVQ ++VSDLATEREIHEFFSFSGEIEH+EIQCE+G+SKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAEN+VPRREMQEVR VDNAA LTPTE
Subjt:  QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTE

Query:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
        NNFPSIEDS SQPSSG+MYVNRAQEVVA+VLAKGSAIGQDAMNKAKAFDEKH+L ASASAKVLSFDR+VGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM
Subjt:  NNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTM

Query:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA
        AAIFAAERK+NDTGSAVKTSKYVT+GAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNL SK  PV A
Subjt:  AAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA

SwissProt top hitse value%identityAlignment
P87216 Protein vip16.8e-0521.48Show/hide
Query:  VQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFP
        V V ++S   TE++I +FFSF G++ +I  + + GE++TA + F  P A + ALLL  A +    + I+                 ++    + T+    
Subjt:  VQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFP

Query:  SIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTMAAIF
          + +  Q    +        +++ +L++G  +    + K+   D+ + + +             G+ E    G+  VNE+    ++   V +K     F
Subjt:  SIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTMAAIF

Query:  AAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLI
        A   KLN T S V T  +     A           AG +AG K +  +    + L+
Subjt:  AAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLI

Q9LFD5 Binding partner of ACD11 19.4e-4742.52Show/hide
Query:  LAMQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLT
        +A Q R+V+V ++S  ATE +I EFFSFSGE+E I+IQ       +A+VTF++ +  E A+LLSGA+I DQ V I  A N+ P                 
Subjt:  LAMQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLT

Query:  PTENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSD
              P+   + +Q S  +  V +A++VV+++LAKG  +G+DA+ KAKAFDEKH   ++A+A V S D+++GL++KLT G S+VNEK+K+VDQ   V++
Subjt:  PTENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSD

Query:  KTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREK
        +T +   AAE+ ++  GSAV  ++YV  G +W  GAF +VA+A    G KT+EK
Subjt:  KTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREK

Arabidopsis top hitse value%identityAlignment
AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.6e-5245.7Show/hide
Query:  MQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPT
        M   TV+V +VS  AT+R++ EFFSFSG+I ++E Q E   +K A+VTF+D +  E A+LLSGATIVD  V +S A ++    E          A L P 
Subjt:  MQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPT

Query:  ENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKT
               +DS   P +G   + +A++VV+++LAKG  +G+DA+ KAK+ DEKH+L ++ASAKV SFD+++G T+K+  G  VV EKV+ VDQK  VS+KT
Subjt:  ENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKT

Query:  MAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLA
         +AI AAE+ +++ GSA+  ++YV  GA W+ GAF KVAKA +  G K +EK  +A
Subjt:  MAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLA

AT5G16840.1 binding partner of acd11 16.7e-4842.52Show/hide
Query:  LAMQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLT
        +A Q R+V+V ++S  ATE +I EFFSFSGE+E I+IQ       +A+VTF++ +  E A+LLSGA+I DQ V I  A N+ P                 
Subjt:  LAMQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLT

Query:  PTENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSD
              P+   + +Q S  +  V +A++VV+++LAKG  +G+DA+ KAKAFDEKH   ++A+A V S D+++GL++KLT G S+VNEK+K+VDQ   V++
Subjt:  PTENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSD

Query:  KTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREK
        +T +   AAE+ ++  GSAV  ++YV  G +W  GAF +VA+A    G KT+EK
Subjt:  KTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREK

AT5G16840.2 binding partner of acd11 13.9e-4842.91Show/hide
Query:  LAMQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLT
        +A Q R+V+V ++S  ATE +I EFFSFSGE+E I+IQ     S  A+VTF++ +  E A+LLSGA+I DQ V I  A N+ P                 
Subjt:  LAMQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLT

Query:  PTENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSD
              P+   + +Q S  +  V +A++VV+++LAKG  +G+DA+ KAKAFDEKH   ++A+A V S D+++GL++KLT G S+VNEK+K+VDQ   V++
Subjt:  PTENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSD

Query:  KTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREK
        +T +   AAE+ ++  GSAV  ++YV  G +W  GAF +VA+A    G KT+EK
Subjt:  KTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREK

AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein5.8e-10073.21Show/hide
Query:  TRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTEN
        TR+VQV +VSDLATEREIHEFFSFSG+IEHIEIQ E G+S+ AFVTF DPKALEIALLLSGATIVDQIV+I+ AEN+V RRE QEVR++DNA  L   E+
Subjt:  TRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTEN

Query:  NFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTMA
           + +   +   + + YV++AQ+VVATVLAKGSA+GQDA+NKAKAFDEKH+L A+ASAKV SFD+RVGLTEKL+VGIS VNEKVKSVDQKL VSDKTMA
Subjt:  NFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTMA

Query:  AIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPV
        AIFAAERKLNDTGSAVK+S+YVTAGAAW +GAF KVA+ GQ AG+KT+EKF+LA+SN+ SK+ P+
Subjt:  AIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPV

AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-4942.41Show/hide
Query:  MQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENH-VPRREMQEVRVVDNAACLTP
        M   TV+V +VS  ATER++ EFFSFSG+I ++E Q E   SK A+VTF+D +  E A+LL+G+TIVD  V+++ + ++ +P   +  +  +  +     
Subjt:  MQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENH-VPRREMQEVRVVDNAACLTP

Query:  TENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDK
         +++ P+ ED             +A++VV+ +++KG  +G+DA+ KAK+ DEKH+L ++ASA+V SFD+R+G TEK+  G +VV+EKVK VDQK  V++K
Subjt:  TENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDK

Query:  TMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLA
        T +AI AAE+ +++ GSA+  ++YV  GA W+ GAF +V+KA +  G K +EK  LA
Subjt:  TMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACTTTCTTTCAAATTGCCTCCAACCTCCAACCTGTACAACTTCCTCTCTCTCTCTCTACAAGAAATTCCTCGAGTTCTTCGATCATTAGCTATGCAGACTCGGAC
GGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGAGTTCTTCTCCTTCTCTGGAGAAATTGAGCACATAGAGATTCAATGTGAACGAGGGGAAT
CCAAGACTGCTTTCGTGACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGTTGTTATCGGGAGCAACAATTGTAGATCAGATTGTAAGCATATCTCCTGCTGAAAAT
CATGTTCCAAGAAGAGAAATGCAGGAAGTTCGGGTTGTGGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTTTCCTAGCATTGAGGATTCTGTGAGCCAGCCTAG
CAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTTGCAACTGTGCTTGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGACGAAA
AACATCGCTTAATGGCTAGTGCATCTGCAAAAGTATTATCCTTTGACAGAAGGGTTGGGCTCACCGAGAAATTGACAGTTGGGATATCAGTGGTTAATGAGAAAGTCAAG
TCTGTAGATCAAAAGCTTCACGTTTCAGATAAAACAATGGCTGCAATCTTTGCAGCTGAGAGGAAACTCAACGATACGGGATCTGCTGTCAAAACAAGCAAGTATGTGAC
AGCAGGTGCTGCTTGGCTAAATGGTGCTTTTGGCAAGGTCGCAAAAGCAGGGCAGGCAGCAGGTACAAAAACCAGAGAGAAGTTCCATTTGGCTATGTCAAACTTAATTT
CGAAGGAACCCCCAGTTGTTGCCTAA
mRNA sequenceShow/hide mRNA sequence
TAATTTTCCTGCTTTTTATCTCTCCCACGCTTTGTCTGGTGATGATACTTTCTTTCAAATTGCCTCCAACCTCCAACCTGTACAACTTCCTCTCTCTCTCTCTACAAGAA
ATTCCTCGAGTTCTTCGATCATTAGCTATGCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGAGTTCTTCTCCTTCTCTGG
AGAAATTGAGCACATAGAGATTCAATGTGAACGAGGGGAATCCAAGACTGCTTTCGTGACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGTTGTTATCGGGAGCAA
CAATTGTAGATCAGATTGTAAGCATATCTCCTGCTGAAAATCATGTTCCAAGAAGAGAAATGCAGGAAGTTCGGGTTGTGGACAATGCTGCATGTCTCACGCCTACAGAA
AATAATTTTCCTAGCATTGAGGATTCTGTGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTTGCAACTGTGCTTGCTAAAGGTTCAGCAAT
TGGACAAGATGCCATGAACAAGGCAAAAGCATTTGACGAAAAACATCGCTTAATGGCTAGTGCATCTGCAAAAGTATTATCCTTTGACAGAAGGGTTGGGCTCACCGAGA
AATTGACAGTTGGGATATCAGTGGTTAATGAGAAAGTCAAGTCTGTAGATCAAAAGCTTCACGTTTCAGATAAAACAATGGCTGCAATCTTTGCAGCTGAGAGGAAACTC
AACGATACGGGATCTGCTGTCAAAACAAGCAAGTATGTGACAGCAGGTGCTGCTTGGCTAAATGGTGCTTTTGGCAAGGTCGCAAAAGCAGGGCAGGCAGCAGGTACAAA
AACCAGAGAGAAGTTCCATTTGGCTATGTCAAACTTAATTTCGAAGGAACCCCCAGTTGTTGCCTAAGCTTAAAACTTACCTCACTTGGCTTGCTTCTATTTTCAGTGGG
GTCAGCCGATGGGGGTCGCCGGAGATGGCAGTCGAAGGTTGGGTGGTGGAGTTGGTGGCCGAAAGTTCGCCAGCAGGGGAAGGAGTCGCAGGAGGTTGGCCAGCGGCCAT
TGTTGGAGGTGGCCGTTGGATTTGGTCAACGACAATCGTCAGAAGGGGTTCCAAAAGTTGGCCAGCAAACTTACTAAATTAAATGAGAGAAAAAAAAAAGGTAACTGATG
GATTTGAATAGTGTTTACTATTCAAACCCATGAGAAAAGATGGGCTTCCTAAATCCTTGCCCCAAACAAGGGTTGGGCTTAGGAGGCCTAATCCATCTAATGAATAAGAG
GTACATCGATTGAACTTGCATTTTGCATTACATATTTGTATAGCACCAAATTGTAGGAATTGTAAAATTGTATTATTTGTAGATGAATGTCATTATATCCTAAAGAATGG
GTTTTGATCTCAAACACTAATCAAAGACAAATATATCTTGCCAAAATGAGCATATTTCAATCGGCACAATGCTTGTAATATCA
Protein sequenceShow/hide protein sequence
MILSFKLPPTSNLYNFLSLSLQEIPRVLRSLAMQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAEN
HVPRREMQEVRVVDNAACLTPTENNFPSIEDSVSQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLMASASAKVLSFDRRVGLTEKLTVGISVVNEKVK
SVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA