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CcUC02G025880 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G025880
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCicolChr02:11037152..11037627
RNA-Seq ExpressionCcUC02G025880
SyntenyCcUC02G025880
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN61322.1 hypothetical protein VITISV_012106 [Vitis vinifera]1.1e-0643.24Show/hide
Query:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
        DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH +F IV +++N CN+
Subjt:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
RVW36350.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.1e-0643.24Show/hide
Query:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
        DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH +F IV +++N CN+
Subjt:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
RVW65725.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.1e-0643.24Show/hide
Query:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
        DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH +F IV +++N CN+
Subjt:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
RVW95765.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.1e-0643.24Show/hide
Query:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
        DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH +F IV +++N CN+
Subjt:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
RVX22902.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.1e-0643.24Show/hide
Query:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
        DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH +F IV +++N CN+
Subjt:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
TrEMBL top hitse value%identityAlignment
A0A438CVN7 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-0743.24Show/hide
Query:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
        DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH +F IV +++N CN+
Subjt:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
A0A438DLM0 Retrovirus-related Pol polyprotein from transposon RE15.4e-0743.24Show/hide
Query:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
        DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH +F IV +++N CN+
Subjt:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
A0A438G0Q9 Retrovirus-related Pol polyprotein from transposon RE15.4e-0743.24Show/hide
Query:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
        DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH +F IV +++N CN+
Subjt:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
A0A438IG92 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-0743.24Show/hide
Query:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
        DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH +F IV +++N CN+
Subjt:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
A5BFR8 Integrase catalytic domain-containing protein5.4e-0743.24Show/hide
Query:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
        DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH +F IV +++N CN+
Subjt:  DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHPAFPIVRQILNICNI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCTATTCTCCAAGAAGGCACTCCTTCAGGGTCTTCTTGATGGTGGATTGTACAAGCTCCCGTTGCGGCCCTCCTCAACATATTCGAACCGTTCAAGCTTG
CCATCATTTGCTCTCCTCATCAAAATCACTTCTAATTTATGGCATTTTCGTTTAGGTCATCCTGCGTTTCCTATTGTTAGACAAATTTTGAACATTTGTAACATT
GATTTTAGGTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATCCTGTTAGTCCTGATATTAACTCTCTCCAATCCCATGCCTTACATCGATGCTAAGCAAGTGACTATCGATAATGGACCTATTCTCCAAGAAGGCACTCCTTCA
GGGTCTTCTTGATGGTGGATTGTACAAGCTCCCGTTGCGGCCCTCCTCAACATATTCGAACCGTTCAAGCTTGCCATCATTTGCTCTCCTCATCAAAATCACTTC
TAATTTATGGCATTTTCGTTTAGGTCATCCTGCGTTTCCTATTGTTAGACAAATTTTGAACATTTGTAACATTGATTTTAGGTCCTAA
Protein sequenceShow/hide protein sequence
MDLFSKKALLQGLLDGGLYKLPLRPSSTYSNRSSLPSFALLIKITSNLWHFRLGHPAFPIVRQILNICNIDFRS