; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G027200 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G027200
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationCicolChr02:15355664..15360206
RNA-Seq ExpressionCcUC02G027200
SyntenyCcUC02G027200
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3449762.1 hypothetical protein FNV43_RR05840 [Rhamnella rubrinervis]7.4e-2182.09Show/hide
Query:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        +SPQ+      +  RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

QBC71330.1 ribosomal protein S12 [Anacampseros filamentosa]5.7e-2174.68Show/hide
Query:  FFVPKPFISPQEVTPKEGRD-----FRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        +F  K F S   +TPK+         RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  FFVPKPFISPQEVTPKEGRD-----FRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

QWW33893.1 ribosomal protein S12 [Thermopsis lanceolata]5.7e-2178.87Show/hide
Query:  PKPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        PK  I+P++      +  RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  PKPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

RWR97786.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]5.7e-2155Show/hide
Query:  TLSEGTREVRRRSTVKERKKQIKQGEENQRCHLAVGRKKLLISLERFFVPKPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGR
        TL +G  E RR S   E K  I   E N+  +       +L+++   ++    I+P++      +  RVR TSGFEITAYIPGIGHN QEHSVVLVRGGR
Subjt:  TLSEGTREVRRRSTVKERKKQIKQGEENQRCHLAVGRKKLLISLERFFVPKPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGR

Query:  VKDLPGVRYHIVRGTLDAVG
        VKDLPGVRYHIVRGTLDAVG
Subjt:  VKDLPGVRYHIVRGTLDAVG

YP_009298970.1 ribosomal protein S12 [Pelargonium dolomiticum]5.7e-2178.57Show/hide
Query:  KPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        K +I+P++    E +  RVR TSGFEITAYIPG GHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  KPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

TrEMBL top hitse value%identityAlignment
A0A0S1MTJ6 30S ribosomal protein S12, chloroplastic4.7e-2174.67Show/hide
Query:  RFFVPKPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        R +V    I+P++      +  RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  RFFVPKPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

A0A1B0PWQ9 30S ribosomal protein S12, chloroplastic2.8e-2178.57Show/hide
Query:  KPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        K +I+P++    E +  RVR TSGFEITAYIPG GHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  KPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

A0A411DAC9 30S ribosomal protein S123.6e-2175.64Show/hide
Query:  FVPKPFISPQEVTPKEGRD-----FRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        F  K F S   +TPK+         RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  FVPKPFISPQEVTPKEGRD-----FRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

A0A411K1V9 Ribosomal protein S122.8e-2174.68Show/hide
Query:  FFVPKPFISPQEVTPKEGRD-----FRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        +F  K F S   +TPK+         RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  FFVPKPFISPQEVTPKEGRD-----FRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

A0A443Q433 30S ribosomal protein S12, chloroplastic2.8e-2155Show/hide
Query:  TLSEGTREVRRRSTVKERKKQIKQGEENQRCHLAVGRKKLLISLERFFVPKPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGR
        TL +G  E RR S   E K  I   E N+  +       +L+++   ++    I+P++      +  RVR TSGFEITAYIPGIGHN QEHSVVLVRGGR
Subjt:  TLSEGTREVRRRSTVKERKKQIKQGEENQRCHLAVGRKKLLISLERFFVPKPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGR

Query:  VKDLPGVRYHIVRGTLDAVG
        VKDLPGVRYHIVRGTLDAVG
Subjt:  VKDLPGVRYHIVRGTLDAVG

SwissProt top hitse value%identityAlignment
A4QJD9 30S ribosomal protein S12, chloroplastic3.7e-2380.6Show/hide
Query:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        I+P++      +  RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

A4QJM3 30S ribosomal protein S12, chloroplastic3.7e-2380.6Show/hide
Query:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        I+P++      +  RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

A4QJV5 30S ribosomal protein S12-A, chloroplastic3.7e-2380.6Show/hide
Query:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        I+P++      +  RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

A4QJX7 30S ribosomal protein S12-B, chloroplastic3.7e-2380.6Show/hide
Query:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        I+P++      +  RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

Q3V510 30S ribosomal protein S12, chloroplastic3.7e-2380.6Show/hide
Query:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        I+P++      +  RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein1.8e-1248.57Show/hide
Query:  KPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        KP  +P+++        +VR ++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G
Subjt:  KPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

ATCG00065.1 ribosomal protein S12A2.6e-2480.6Show/hide
Query:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        I+P++      +  RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

ATCG00905.1 ribosomal protein S12C2.6e-2480.6Show/hide
Query:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        I+P++      +  RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

ATCG01230.1 ribosomal protein S12B2.6e-2480.6Show/hide
Query:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        I+P++      +  RVR TSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
Subjt:  ISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG

ATMG00980.1 Ribosomal protein S12/S23 family protein1.8e-1248.57Show/hide
Query:  KPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG
        KP  +P+++        +VR ++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G
Subjt:  KPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTGTTGGATGCCCTTCTTCCTGGCAAGATCAGATCAAGAATAGCCAAAGGCTAGGAAAGCACAGTCAGACTAGTGCCATGCCCAAAGCACCAAGACTACTTATT
CCGCTAAAACAGCGCCTGGAAAACGGAAAACTGAGGACTACCTCGGGAATGAATGGACATGACCTTTCATATACTAGAATTAAAGAGCCGGGGGGAAAGACTTCA
CAGACCGTCGAAGGGATATACTTGCTTGGTATCCGGATTCACCTGGGGAGGAATTTATTCAGCGGATGTCGAGTCAGTTCGAAAGCCAGTCCCCACAGGAGCATA
AACAAAGCGAGCAGGGCCAGTAGTAGATCTAGGATCAATACCCTTCTAAGTTCTATACCCAGCAGGAGCAGCAGAAACGAAGAGACAATGTTGAAGGCAAGTCAA
GCACTAAGACAAAGCAGCAATAAGACAAGTTTAAGACAACCGGCGGAAAGGGCAAGTAATGGCACCTTAGAAAAGGCGGGGTGTTCTCTTCTCTACTCGCAGCCT
TACTCCGCTGCTCGGCCTAAGGAGAAGTTAGACTTGTCATCAACATTGGTAGCAGGTTTCTCTTTGGGTAAGTACCGAAAAATGGAAAGGGAGTCCGAACTGTGC
ATTTATAAAGAGGTAATAGGGAAAGAAGACTCTAAAATACTCTTAGCAAGTAGTGCCTCCACGTCCTCAGGCAATGCACCAAGGCTGTCATCAGTTTCTCTGTCC
CGAAGGAGAGCTGCTTTTAAGCAGGGACATATGGAAGAACGAGGCATCTACGATGCGGAGATCCAGTTGTGCTTGCTGCCTATCCACTTTGCGAGTAAGAGGCTC
TGTGCAAGAGTGGAAGTCATTCCCGAACCCCCTCCTCCCTCTTCTTTTCAGTCAAGACTTCTTCCTCTCCTTTACAGTCGAGCGTCTTCGAACCTCTTGTTGTTA
AGAAATGATGCTAAGTCTTCGGCTTTCACTGGATTCACTACTCTAAGTGAAGGAACCCGAGAGGTTCGAAGACGCTCGACTGTAAAGGAGAGGAAGAAGCAAATA
AAGCAAGGGGAAGAAAATCAGCGATGCCATTTAGCTGTTGGAAGGAAGAAACTTCTCATATCGTTGGAGAGGTTCTTTGTGCCAAAGCCATTTATAAGCCCTCAA
GAGGTAACCCCGAAAGAGGGAAGAGATTTTCGAGTACGGGAAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCT
GTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGA
mRNA sequenceShow/hide mRNA sequence
GCTGTTGGATGCCCTTCTTCCTGGCAAGATCAGATCAAGAATAGCCAAAGGCTAGGAAAGCACAGTCAGACTAGTGCCATGCCCAAAGCACCAAGACTACTTATT
CCGCTAAAACAGCGCCTGGAAAACGGAAAACTGAGGACTACCTCGGGAATGAATGGACATGACCTTTCATATACTAGAATTAAAGAGCCGGGGGGAAAGACTTCA
CAGACCGTCGAAGGGATATACTTGCTTGGTATCCGGATTCACCTGGGGAGGAATTTATTCAGCGGATGTCGAGTCAGTTCGAAAGCCAGTCCCCACAGGAGCATA
AACAAAGCGAGCAGGGCCAGTAGTAGATCTAGGATCAATACCCTTCTAAGTTCTATACCCAGCAGGAGCAGCAGAAACGAAGAGACAATGTTGAAGGCAAGTCAA
GCACTAAGACAAAGCAGCAATAAGACAAGTTTAAGACAACCGGCGGAAAGGGCAAGTAATGGCACCTTAGAAAAGGCGGGGTGTTCTCTTCTCTACTCGCAGCCT
TACTCCGCTGCTCGGCCTAAGGAGAAGTTAGACTTGTCATCAACATTGGTAGCAGGTTTCTCTTTGGGTAAGTACCGAAAAATGGAAAGGGAGTCCGAACTGTGC
ATTTATAAAGAGGTAATAGGGAAAGAAGACTCTAAAATACTCTTAGCAAGTAGTGCCTCCACGTCCTCAGGCAATGCACCAAGGCTGTCATCAGTTTCTCTGTCC
CGAAGGAGAGCTGCTTTTAAGCAGGGACATATGGAAGAACGAGGCATCTACGATGCGGAGATCCAGTTGTGCTTGCTGCCTATCCACTTTGCGAGTAAGAGGCTC
TGTGCAAGAGTGGAAGTCATTCCCGAACCCCCTCCTCCCTCTTCTTTTCAGTCAAGACTTCTTCCTCTCCTTTACAGTCGAGCGTCTTCGAACCTCTTGTTGTTA
AGAAATGATGCTAAGTCTTCGGCTTTCACTGGATTCACTACTCTAAGTGAAGGAACCCGAGAGGTTCGAAGACGCTCGACTGTAAAGGAGAGGAAGAAGCAAATA
AAGCAAGGGGAAGAAAATCAGCGATGCCATTTAGCTGTTGGAAGGAAGAAACTTCTCATATCGTTGGAGAGGTTCTTTGTGCCAAAGCCATTTATAAGCCCTCAA
GAGGTAACCCCGAAAGAGGGAAGAGATTTTCGAGTACGGGAAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCT
GTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGA
Protein sequenceShow/hide protein sequence
AVGCPSSWQDQIKNSQRLGKHSQTSAMPKAPRLLIPLKQRLENGKLRTTSGMNGHDLSYTRIKEPGGKTSQTVEGIYLLGIRIHLGRNLFSGCRVSSKASPHRSI
NKASRASSRSRINTLLSSIPSRSSRNEETMLKASQALRQSSNKTSLRQPAERASNGTLEKAGCSLLYSQPYSAARPKEKLDLSSTLVAGFSLGKYRKMERESELC
IYKEVIGKEDSKILLASSASTSSGNAPRLSSVSLSRRRAAFKQGHMEERGIYDAEIQLCLLPIHFASKRLCARVEVIPEPPPPSSFQSRLLPLLYSRASSNLLLL
RNDAKSSAFTGFTTLSEGTREVRRRSTVKERKKQIKQGEENQRCHLAVGRKKLLISLERFFVPKPFISPQEVTPKEGRDFRVRETSGFEITAYIPGIGHNLQEHS
VVLVRGGRVKDLPGVRYHIVRGTLDAVG