; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G027700 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G027700
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionMitochondrial transcription termination factor family protein
Genome locationCicolChr02:19068320..19069186
RNA-Seq ExpressionCcUC02G027700
SyntenyCcUC02G027700
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0032502 - developmental process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8529005.1 hypothetical protein F0562_033507 [Nyssa sinensis]1.3e-4560.69Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPEHC------
        +AL +PEKQLGK +LLNPRLISYSI  KLS+IVDFLAS GL K+GMIGKVLVK PF+MGY VDKRL PTLE LKS+GL ++DLQ VA+G+PE        
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPEHC------

Query:  ------------GFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL
                    GFKD QI A+V               EP I FL+EVMGR+I+E+A YPDFFRHGLKKRLEL
Subjt:  ------------GFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL

OMP10113.1 Mitochodrial transcription termination factor-related protein [Corchorus olitorius]6.3e-4558.96Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPE--------
        +AL +PEKQLGK ILLNPRLISYSI  KL+EIVDFLA+ GL +EGMIGKVL +YPF+MGY VDKRL PT E LKS+GL + DLQ VA+ +PE        
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPE--------

Query:  ----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL
                   CGF D QI A+VA              EP I FL+EVMGR+I+E+A YPD+FRHGLKKRLEL
Subjt:  ----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL

XP_006486552.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Citrus sinensis]2.1e-4560.12Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPE--------
        +AL +PEKQLG+ ILLNPRLISYSI  KL+E VDFLAS GL +EGMIGKVLVK+PF+MGY VD RL PT E LKS+GLK++DLQ VAV +PE        
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPE--------

Query:  ----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL
                   CGF D QI A+VA              EP I FL+EVMGR+I+E+A YPDFFRHGLKKRLEL
Subjt:  ----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL

XP_021301114.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Herrania umbratica]5.7e-4661.27Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYP---------
        +AL +PEKQLGK ILLNPRLISYSI  KL+EIVDFLAS GL +EGMIGKVL KYPF+MGY VDKRL PT E LKS+GL   DLQ VA+ +P         
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYP---------

Query:  ---------EHCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL
                 E CGF D QI A+VA              EP I FL+EVMGR+IEE+A YPDFFRHGLKKRLEL
Subjt:  ---------EHCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL

XP_031744171.1 LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus]1.8e-4764.16Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPE--------
        +ALDIPEK LGK ILLNPRLI YSIVPKL+EIVDF A+FGLDK+G+I KVLVKYPFLMGY VDK L PTL+  KS+GLKDVDLQA+A GYPE        
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPE--------

Query:  ----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL
                  +CGF+DAQIVA+VA              EP INFLIE      EE+AGYPDFFRHGLKKRLEL
Subjt:  ----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL

TrEMBL top hitse value%identityAlignment
A0A1R3HP25 Mitochodrial transcription termination factor-related protein3.0e-4558.96Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPE--------
        +AL +PEKQLGK ILLNPRLISYSI  KL+EIVDFLA+ GL +EGMIGKVL +YPF+MGY VDKRL PT E LKS+GL + DLQ VA+ +PE        
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPE--------

Query:  ----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL
                   CGF D QI A+VA              EP I FL+EVMGR+I+E+A YPD+FRHGLKKRLEL
Subjt:  ----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL

A0A1R3KSP4 Mitochodrial transcription termination factor-related protein3.0e-4558.96Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPE--------
        +AL +PEKQLGK ILLNPRLISYSI  KL+EIVDFLA+ GL +EGMIGKVL +YPF+MGY VDKRL PT E LKS+GL + DLQ VA+ +PE        
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPE--------

Query:  ----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL
                   CGF D QI A+VA              EP I FL+EVMGR+I+E+A YPD+FRHGLKKRLEL
Subjt:  ----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL

A0A5B6Z9F0 Uncharacterized protein3.6e-4660.69Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPEHC------
        +AL +PEKQLGK +LLNPR+ISYSI  KLS+IVDFLAS GL KEGMIGKVLVKYPF+MGY VDKRL PTLE LKS+GL ++DLQ VA+ +PE        
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPEHC------

Query:  ------------GFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL
                    GFKD QI A+V               EP I FL+EVMGR+I+E+A YPDFFRHGLKKRLEL
Subjt:  ------------GFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL

A0A5J5ADB8 Uncharacterized protein6.1e-4660.69Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPEHC------
        +AL +PEKQLGK +LLNPRLISYSI  KLS+IVDFLAS GL K+GMIGKVLVK PF+MGY VDKRL PTLE LKS+GL ++DLQ VA+G+PE        
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPEHC------

Query:  ------------GFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL
                    GFKD QI A+V               EP I FL+EVMGR+I+E+A YPDFFRHGLKKRLEL
Subjt:  ------------GFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL

A0A6J1BSC3 transcription termination factor MTERF6, chloroplastic/mitochondrial2.7e-4661.27Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYP---------
        +AL +PEKQLGK ILLNPRLISYSI  KL+EIVDFLAS GL +EGMIGKVL KYPF+MGY VDKRL PT E LKS+GL   DLQ VA+ +P         
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYP---------

Query:  ---------EHCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL
                 E CGF D QI A+VA              EP I FL+EVMGR+IEE+A YPDFFRHGLKKRLEL
Subjt:  ---------EHCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL

SwissProt top hitse value%identityAlignment
F4JVI3 Transcription termination factor MTERF5, chloroplastic7.8e-0636.71Show/hide
Query:  LKALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGL
        L+ L I + Q  K I   P +++YS   KL+  V+FL+  GL +E  IG++L + P +M Y V+ +L PT+E  +S+ +
Subjt:  LKALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGL

Q9FK23 Transcription termination factor MTERF8, chloroplastic5.6e-0426.83Show/hide
Query:  IPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFL-----------MGYIVD-KRLHPTLESLKSMGL---KDVDLQAVAVG
        +  +Q+ K + + P +IS S   KL   ++FL   G D  GM  K L K P +           +G++V     H T E   +MG       D     +G
Subjt:  IPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFL-----------MGYIVD-KRLHPTLESLKSMGL---KDVDLQAVAVG

Query:  YPEHCGFKDAQIVAMVA-------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLE
             G     I+AM               E  + +LIE MGR++EE+  +P F  + L  R++
Subjt:  YPEHCGFKDAQIVAMVA-------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLE

Q9SZL6 Transcription termination factor MTERF6, chloroplastic/mitochondrial1.5e-3850.87Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLK-SMGLKDVDLQAVAVGYPE-------
        +AL +PE QLGK IL NPRLISYSI  KL+ IV FLAS GLD++GMIGKVLVK PFLMGY VDKRL PT E LK S+GL +  +++V + +P+       
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLK-SMGLKDVDLQAVAVGYPE-------

Query:  -----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLE
                    CGF D+QI  MV               +P I FL++VMGR ++E+A YP+FF HGLKK++E
Subjt:  -----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLE

Arabidopsis top hitse value%identityAlignment
AT2G44020.1 Mitochondrial transcription termination factor family protein3.8e-0826.5Show/hide
Query:  LKALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPEHCGFKDA
        L+ + I   +LG+ +   P+++  S+V +L+ +V FL    ++K+  +G VL+KYP L+G+ ++  +  ++  L S+G+   D+  +   YP   G +  
Subjt:  LKALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDVDLQAVAVGYPEHCGFKDA

Query:  QIVAMVAEPGINFLIEV
          V  + +P +++LI +
Subjt:  QIVAMVAEPGINFLIEV

AT4G14605.1 Mitochondrial transcription termination factor family protein5.5e-0736.71Show/hide
Query:  LKALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGL
        L+ L I + Q  K I   P +++YS   KL+  V+FL+  GL +E  IG++L + P +M Y V+ +L PT+E  +S+ +
Subjt:  LKALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGL

AT4G38160.1 Mitochondrial transcription termination factor family protein1.1e-3950.87Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLK-SMGLKDVDLQAVAVGYPE-------
        +AL +PE QLGK IL NPRLISYSI  KL+ IV FLAS GLD++GMIGKVLVK PFLMGY VDKRL PT E LK S+GL +  +++V + +P+       
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLK-SMGLKDVDLQAVAVGYPE-------

Query:  -----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLE
                    CGF D+QI  MV               +P I FL++VMGR ++E+A YP+FF HGLKK++E
Subjt:  -----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLE

AT4G38160.2 Mitochondrial transcription termination factor family protein1.1e-3950.87Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLK-SMGLKDVDLQAVAVGYPE-------
        +AL +PE QLGK IL NPRLISYSI  KL+ IV FLAS GLD++GMIGKVLVK PFLMGY VDKRL PT E LK S+GL +  +++V + +P+       
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLK-SMGLKDVDLQAVAVGYPE-------

Query:  -----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLE
                    CGF D+QI  MV               +P I FL++VMGR ++E+A YP+FF HGLKK++E
Subjt:  -----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLE

AT4G38160.3 Mitochondrial transcription termination factor family protein1.1e-3950.87Show/hide
Query:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLK-SMGLKDVDLQAVAVGYPE-------
        +AL +PE QLGK IL NPRLISYSI  KL+ IV FLAS GLD++GMIGKVLVK PFLMGY VDKRL PT E LK S+GL +  +++V + +P+       
Subjt:  KALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLK-SMGLKDVDLQAVAVGYPE-------

Query:  -----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLE
                    CGF D+QI  MV               +P I FL++VMGR ++E+A YP+FF HGLKK++E
Subjt:  -----------HCGFKDAQIVAMVA--------------EPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACCACTATCCTGTGGTTCTTCAGGAGTAAAGGGTTCGAGGAAAAAAGCATCCACGAAATGTTCACAAAGTGCAAACGGTTTGAAGGCATTGGATATCCCTGAGAA
GCAGCTTGGGAAGACGATTTTGCTTAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTTCTGAGATTGTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGGAAG
GGATGATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGGTATATTGTCGATAAAAGGCTACATCCTACATTAGAGTCTCTGAAATCTATGGGTTTGAAGGATGTT
GATCTTCAAGCAGTTGCAGTTGGCTACCCTGAGCACTGTGGTTTTAAAGATGCGCAGATAGTAGCTATGGTGGCTGAACCAGGGATCAATTTCTTGATAGAAGTTATGGG
GAGAAAAATTGAAGAAATTGCTGGTTATCCGGACTTCTTTCGACATGGTTTAAAGAAGAGGCTGGAGTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTACCACTATCCTGTGGTTCTTCAGGAGTAAAGGGTTCGAGGAAAAAAGCATCCACGAAATGTTCACAAAGTGCAAACGGTTTGAAGGCATTGGATATCCCTGAGAA
GCAGCTTGGGAAGACGATTTTGCTTAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTTCTGAGATTGTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGGAAG
GGATGATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGGTATATTGTCGATAAAAGGCTACATCCTACATTAGAGTCTCTGAAATCTATGGGTTTGAAGGATGTT
GATCTTCAAGCAGTTGCAGTTGGCTACCCTGAGCACTGTGGTTTTAAAGATGCGCAGATAGTAGCTATGGTGGCTGAACCAGGGATCAATTTCTTGATAGAAGTTATGGG
GAGAAAAATTGAAGAAATTGCTGGTTATCCGGACTTCTTTCGACATGGTTTAAAGAAGAGGCTGGAGTTATGA
Protein sequenceShow/hide protein sequence
MVPLSCGSSGVKGSRKKASTKCSQSANGLKALDIPEKQLGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYIVDKRLHPTLESLKSMGLKDV
DLQAVAVGYPEHCGFKDAQIVAMVAEPGINFLIEVMGRKIEEIAGYPDFFRHGLKKRLEL