CuGenDBv2

Gene ID	CcUC02G028120
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Protein Ycf2
Genome location	CicolChr02:21421945..21422572
RNA-Seq Expression	CcUC02G028120
Synteny	CcUC02G028120
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

2.7e-66

78.98

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Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR
        +L M SNPIERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DE  MDSSNKISFLNKNPF+YLF+LFHDRNRR
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR

Query:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        GYTLHHDFES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFLNEVF+SRDESKKKYLLVLPPIFY+E
Subjt:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

QZL38637.1 Ycf2 protein [Citrullus naudinianus]

8.5e-68

79.89

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Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY
        +L M SNPIERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DEMDSSNKISFLNKNPF+YLF+LFHDRNRRGY
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY

Query:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        TLHHDFES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFLNEVF+SRDESKKKYLLVLPPIFY+E
Subjt:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

QZL38725.1 Ycf2 protein [Citrullus ecirrhosus]

8.5e-68

79.89

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Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY
        +L M SNPIERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DEMDSSNKISFLNKNPF+YLF+LFHDRNRRGY
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY

Query:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        TLHHDFES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFLNEVF+SRDESKKKYLLVLPPIFY+E
Subjt:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

YP_009326033.1 Ycf2 [Citrullus lanatus]

8.5e-68

79.89

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Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY
        +L M SNPIERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DEMDSSNKISFLNKNPF+YLF+LFHDRNRRGY
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY

Query:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        TLHHDFES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFLNEVF+SRDESKKKYLLVLPPIFY+E
Subjt:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

YP_009420838.1 Ycf2 [Citrullus colocynthis]

8.5e-68

79.89

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Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY
        +L M SNPIERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DEMDSSNKISFLNKNPF+YLF+LFHDRNRRGY
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY

Query:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        TLHHDFES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFLNEVF+SRDESKKKYLLVLPPIFY+E
Subjt:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LED5 Protein Ycf2

4.1e-68

79.89

Show/hide

Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY
        +L M SNPIERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DEMDSSNKISFLNKNPF+YLF+LFHDRNRRGY
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY

Query:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        TLHHDFES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFLNEVF+SRDESKKKYLLVLPPIFY+E
Subjt:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

A0A1P8LF93 Protein Ycf2

4.1e-68

79.89

Show/hide

Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY
        +L M SNPIERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DEMDSSNKISFLNKNPF+YLF+LFHDRNRRGY
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY

Query:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        TLHHDFES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFLNEVF+SRDESKKKYLLVLPPIFY+E
Subjt:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

A0A249RXF2 Protein Ycf2

4.1e-68

79.89

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Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY
        +L M SNPIERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DEMDSSNKISFLNKNPF+YLF+LFHDRNRRGY
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY

Query:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        TLHHDFES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFLNEVF+SRDESKKKYLLVLPPIFY+E
Subjt:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

A0A343A8H4 Protein Ycf2

4.1e-68

79.89

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Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY
        +L M SNPIERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DEMDSSNKISFLNKNPF+YLF+LFHDRNRRGY
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY

Query:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        TLHHDFES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFLNEVF+SRDESKKKYLLVLPPIFY+E
Subjt:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

A0A343F2F1 Protein Ycf2

4.1e-68

79.89

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Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY
        +L M SNPIERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DEMDSSNKISFLNKNPF+YLF+LFHDRNRRGY
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY

Query:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        TLHHDFES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFLNEVF+SRDESKKKYLLVLPPIFY+E
Subjt:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

SwissProt top hits

e value

%identity

Alignment

A4GYV4 Protein Ycf2

1.7e-63

Show/hide

Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR
        +L + SNP ERSTRDQKL             +S+NK+IVNIFK I YLQNT+SIHPISSD GCDMVL+DE  MDSSNKISFLNKNPF  LF+LFHDRN  
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR

Query:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        GYTLHHDFES+ERFQEMA+LFT SITE DLVYHK FAF IDSYGLD  QFLNEVF+SRDESKKK LLVLPPIFY+E
Subjt:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

B1A978 Protein Ycf2

1.3e-63

75.57

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Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR
        +L + SNP ERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DE  MDSSNKISFLNKNPF  LF+LFHDRNR 
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR

Query:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        G TLHHDFES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFLNEVF+SRDESKKK LLVLPPIFY+E
Subjt:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

Q14F97 Protein Ycf2

1.7e-63

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Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR
        +L + SNP ERSTRDQKL             +S+NK+IVNIFK I YLQNT+SIHPISSD GCDMVL+DE  MDSSNKISFLNKNPF  LF+LFHDRN  
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR

Query:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        GYTLHHDFES+ERFQEMA+LFT SITE DLVYHK FAF IDSYGLD  QFLNEVF+SRDESKKK LLVLPPIFY+E
Subjt:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

Q2L949 Protein Ycf2

1.3e-63

74.14

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Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY
        +L + SNP ERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DE+ SSNKISFLNKNPF  LF+LFHD+NRRGY
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGY

Query:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        TLHHDFES+ERFQEMA+LFT SITE DLVY+K FAFSIDSYGLD  QFLNEVF+SRDESKKK L  LPPIFY+E
Subjt:  TLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

Q2QD30 Protein Ycf2

1.8e-68

78.41

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Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR
        +L M SNPIERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DE  MDSSNKISFL KNPF+YLF+LFHDRNRR
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR

Query:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        GYTLHHDFES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFLNEVF+SRDESKKKYLLVLPPIFY+E
Subjt:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

2.0e-59

72.16

Show/hide

Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR
        +L + SNP ERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DE  MDSSNKISFLNKNPF  LF+LFH+R R 
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR

Query:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        GYTL H  ES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFL EVF+ RDESKKK LLVLPPIFY+E
Subjt:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

2.0e-59

72.16

Show/hide

Query:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR
        +L + SNP ERSTRDQKL             +S+NK+IVNIFKII YLQNT+SIHPISSD GCDMV +DE  MDSSNKISFLNKNPF  LF+LFH+R R 
Subjt:  QLQMVSNPIERSTRDQKL-------------QSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDE--MDSSNKISFLNKNPFVYLFNLFHDRNRR

Query:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE
        GYTL H  ES+ERFQEMA+LFT SITE DLVYHK FAFSIDSYGLD  QFL EVF+ RDESKKK LLVLPPIFY+E
Subjt:  GYTLHHDFESKERFQEMANLFTSSITELDLVYHKRFAFSIDSYGLD--QFLNEVFSSRDESKKKYLLVLPPIFYDE

Sequences

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CDS sequence

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ATGGAACAACTTCAGATGGTATCAAATCCTATTGAGAGGTCCACTAGAGATCAGAAATTGCAATCGAAAAATAAAGACATAGTTAATATATTCAAGATAATTATGTATTT
ACAAAATACCATCTCAATTCATCCTATTTCATCAGATTCGGGATGTGATATGGTTCTAGAGGATGAAATGGACAGTTCCAATAAGATTTCATTCTTGAACAAAAATCCAT
TTGTTTATTTATTTAATCTATTCCATGACCGGAACAGGAGGGGATACACATTACACCACGATTTTGAATCAAAAGAGAGATTTCAAGAAATGGCAAATCTATTCACTTCA
TCAATAACCGAGCTGGATCTTGTGTATCATAAGAGATTTGCCTTTTCTATTGATTCCTACGGATTGGATCAATTCTTGAATGAGGTATTCAGCTCCAGGGATGAATCGAA
AAAGAAATATTTATTGGTTCTACCTCCTATTTTTTATGACGAATGA

mRNA sequence

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Protein sequence

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MEQLQMVSNPIERSTRDQKLQSKNKDIVNIFKIIMYLQNTISIHPISSDSGCDMVLEDEMDSSNKISFLNKNPFVYLFNLFHDRNRRGYTLHHDFESKERFQEMANLFTS
SITELDLVYHKRFAFSIDSYGLDQFLNEVFSSRDESKKKYLLVLPPIFYDE

CcUC02G028120 (gene) of Watermelon (PI 537277) v1 genome