CuGenDBv2

Gene ID	CcUC02G028140
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Protein Ycf2
Genome location	CicolChr02:21425189..21426595
RNA-Seq Expression	CcUC02G028140
Synteny	CcUC02G028140
Gene Ontology terms	GO:0110165 - cellular anatomical structure (cellular component)
InterPro domains	IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

2.8e-114

57.94

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Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSYL FITVFLN F+DNKP+ FLIDDSDDIDDSGDIDDSD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGFGSIT GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  ++LSN S     +Y+                                                 P +K GITSYGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA L SS+TEKDCS+FDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

QZL38725.1 Ycf2 protein [Citrullus ecirrhosus]

2.0e-115

58.41

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Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSYL FITVFLNTF+DNKPE FLIDDSDDIDDSGDIDDSD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGFGSIT GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  ++LSN S     +Y+                                                 P +K GITSYGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA L SS+TEKDCS+FDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

YP_009326033.1 Ycf2 [Citrullus lanatus]

2.0e-115

58.41

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Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSYL FITVFLNTF+DNKPE FLIDDSDDIDDSGDIDDSD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGFGSIT GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  ++LSN S     +Y+                                                 P +K GITSYGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA L SS+TEKDCS+FDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

YP_009420838.1 Ycf2 [Citrullus colocynthis]

2.0e-115

58.41

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Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSYL FITVFLNTF+DNKPE FLIDDSDDIDDSGDIDDSD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGFGSIT GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  ++LSN S     +Y+                                                 P +K GITSYGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA L SS+TEKDCS+FDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

YP_009751528.1 Ycf2 protein [Thladiantha dubia]

2.8e-114

57.94

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Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSYL FITVFLN F+DNKP+ FLIDDSDDIDDSGDIDDSD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGFGSIT GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  ++LSN S     +Y+                                                 P +K GITSYGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA L SS+TEKDCS+FDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LED5 Protein Ycf2

9.5e-116

58.41

Show/hide

Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSYL FITVFLNTF+DNKPE FLIDDSDDIDDSGDIDDSD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGFGSIT GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  ++LSN S     +Y+                                                 P +K GITSYGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA L SS+TEKDCS+FDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

A0A1P8LF93 Protein Ycf2

9.5e-116

58.41

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Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSYL FITVFLNTF+DNKPE FLIDDSDDIDDSGDIDDSD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGFGSIT GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  ++LSN S     +Y+                                                 P +K GITSYGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA L SS+TEKDCS+FDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

A0A249RXF2 Protein Ycf2

9.5e-116

58.41

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Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSYL FITVFLNTF+DNKPE FLIDDSDDIDDSGDIDDSD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGFGSIT GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  ++LSN S     +Y+                                                 P +K GITSYGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA L SS+TEKDCS+FDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

A0A343A8H4 Protein Ycf2

9.5e-116

58.41

Show/hide

Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSYL FITVFLNTF+DNKPE FLIDDSDDIDDSGDIDDSD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGFGSIT GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  ++LSN S     +Y+                                                 P +K GITSYGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA L SS+TEKDCS+FDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

A0A343F2F1 Protein Ycf2

9.5e-116

58.41

Show/hide

Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSYL FITVFLNTF+DNKPE FLIDDSDDIDDSGDIDDSD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGFGSIT GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  ++LSN S     +Y+                                                 P +K GITSYGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA L SS+TEKDCS+FDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

SwissProt top hits

e value

%identity

Alignment

A0A379 Protein Ycf2

2.4e-108

55.14

Show/hide

Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSR ILVIGSIG+G+SYLVKYLATNSY+ FITVFLN F+DNKP+ FLIDD  +IDDS DID SD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL N+LS DCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGFGSIT GSN RDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  + LSN       +Y+                                                 P +K GITSYGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA + SS+TEKDCSQFDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

A4GYV4 Protein Ycf2

4.4e-110

55.37

Show/hide

Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSY+ FITVFLN F+DNKP+ FLIDD DDIDDS DID SD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL T MN LTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHT  FGS+T GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  + LSN       +Y+                                                 P +K GIT YGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA + SS+TEKDCSQFDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

Q09WV7 Protein Ycf2

4.8e-109

55.37

Show/hide

Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALS SRGILVIGSIGTG+SYLVKYLATNSY+ FITVFLN F+DNKP+ FLIDDSDDIDDS D      IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGFGSIT GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  ++LSN S     +Y+                                                +  +K GITSYGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EG  + SS+TEKDCSQFDNDR TLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

Q0ZIV6 Protein Ycf2

3.4e-110

54.9

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Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDD-----------SDDIDDSGD
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSY+ FITVFLN F+DNKP+ FL DD           SDDID S D
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDD-----------SDDIDDSGD

Query:  IDDSDYIDRDLDTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL----------
        ID SD IDRDLDTELEL TMMNALTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL          
Subjt:  IDDSDYIDRDLDTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL----------

Query:  ------------------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI----------------------------
                                            G HLEKKMFHTNGFGSIT GSN RDLVALTNEAL I                            
Subjt:  ------------------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI----------------------------

Query:  ---------------------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVEN
                             ++LSN       +Y+                                                 P +K GITSYGLVEN
Subjt:  ---------------------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVEN

Query:  DSDLVHGLLEVEGAQLESSQTEKDCSQFDNDRVTLLLWP
        DSDLVHGLLEVEGA + SS+TEKDCSQFDNDRVTLLL P
Subjt:  DSDLVHGLLEVEGAQLESSQTEKDCSQFDNDRVTLLLWP

Q14F97 Protein Ycf2

4.4e-110

55.37

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Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSRGILVIGSIGTG+SYLVKYLATNSY+ FITVFLN F+DNKP+ FLIDD DDIDDS DID SD IDRDL
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL T MN LTMDMMPEIDRFYITLQFELAKAM  CIIWIPNIHDLDVNESNYLSLGLL NYLSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHT  FGS+T GSNVRDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV
                  + LSN       +Y+                                                 P +K GIT YGLVENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYL------------------------------------------------DPIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLLLWP
        EGA + SS+TEKDCSQFDNDRVTLLL P
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLLLWP

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

9.1e-103

52.94

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Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSR ILVIGSIGTG+SYLVKYLATNSY+ FITVFLN F+DNKP+ F IDD  DIDDS DID S+ IDR+L
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMM EIDRFYITLQFELAKAM  CIIWIPNIHDLDVNES+YL+LGLL N LSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGF SIT GS+ RDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYLD------------------------------------------------PIKKKGITSYGLVENDSDLVHGLLEV
                  +++SN       +Y+                                                 P +K  ITSYG VENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYLD------------------------------------------------PIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLL
        +GA + SS+TEKDCSQFDNDRVTLL
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLL

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

9.1e-103

52.94

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Query:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL
        TITYSQTSCG N+FHFPSHGKPF LRLALSPSR ILVIGSIGTG+SYLVKYLATNSY+ FITVFLN F+DNKP+ F IDD  DIDDS DID S+ IDR+L
Subjt:  TITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDL

Query:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------
        DTELEL TMMNALTMDMM EIDRFYITLQFELAKAM  CIIWIPNIHDLDVNES+YL+LGLL N LSRDCERC TRNIL                     
Subjt:  DTELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNIL---------------------

Query:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------
                                 G HLEKKMFHTNGF SIT GS+ RDLVALTNEAL I                                       
Subjt:  -------------------------GIHLEKKMFHTNGFGSITKGSNVRDLVALTNEALLI---------------------------------------

Query:  ----------IVLSNRSFKTFGLYLD------------------------------------------------PIKKKGITSYGLVENDSDLVHGLLEV
                  +++SN       +Y+                                                 P +K  ITSYG VENDSDLVHGLLEV
Subjt:  ----------IVLSNRSFKTFGLYLD------------------------------------------------PIKKKGITSYGLVENDSDLVHGLLEV

Query:  EGAQLESSQTEKDCSQFDNDRVTLL
        +GA + SS+TEKDCSQFDNDRVTLL
Subjt:  EGAQLESSQTEKDCSQFDNDRVTLL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACTCTGACAATCACTTATTCACAAACCTCGTGTGGGGGTAATAATTTTCATTTCCCATCTCATGGAAAACCCTTTTTGCTCCGCTTAGCCCTATCCCCCTCT
AGGGGTATTTTAGTGATAGGTTCTATAGGAACTGGACAATCCTATTTGGTCAAATACCTAGCGACAAACTCTTATCTTTCTTTCATTACAGTATTTTTGAACACG
TTTATGGATAACAAGCCTGAACGTTTTCTTATTGATGATAGTGACGATATTGATGATAGTGGCGATATTGATGATAGTGACTATATCGACCGTGACCTTGATACG
GAGCTGGAGCTTCAAACTATGATGAATGCGCTAACTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTGT
TCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTTGGTCTATTAGCGAACTATCTCTCCAGGGATTGTGAAAGA
TGTTTCACTAGAAATATTCTTGGGATTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGTTCCATAACCAAGGGTTCCAATGTACGAGATCTTGTAGCA
CTTACCAATGAGGCTCTATTGATTATTGTTCTGTCGAATCGATCATTCAAGACCTTTGGTCTCTACCTGGACCCGATAAAAAAAAAAGGGATCACTTCTTATGGA
CTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCAGTTGGAATCCTCACAGACAGAAAAAGATTGCAGTCAATTTGATAATGAT
CGAGTGACATTGCTTCTTTGGCCCTAA

mRNA sequence

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Protein sequence

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MTLTITYSQTSCGGNNFHFPSHGKPFLLRLALSPSRGILVIGSIGTGQSYLVKYLATNSYLSFITVFLNTFMDNKPERFLIDDSDDIDDSGDIDDSDYIDRDLDT
ELELQTMMNALTMDMMPEIDRFYITLQFELAKAMCSCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCERCFTRNILGIHLEKKMFHTNGFGSITKGSNVRDLVA
LTNEALLIIVLSNRSFKTFGLYLDPIKKKGITSYGLVENDSDLVHGLLEVEGAQLESSQTEKDCSQFDNDRVTLLLWP

CcUC02G028140 (gene) of Watermelon (PI 537277) v1 genome