; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G028150 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G028150
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionProtein Ycf2
Genome locationCicolChr02:21427129..21427363
RNA-Seq ExpressionCcUC02G028150
SyntenyCcUC02G028150
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
GO:0016020 - membrane (cellular component)
GO:0000166 - nucleotide binding (molecular function)
InterPro domainsIPR008543 - Uncharacterised protein family Ycf2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_009262247.1 hypothetical chloroplast RF2 [Spondias bahiensis]1.4e-1873.97Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
YP_009262268.1 hypothetical chloroplast RF2 [Spondias bahiensis]1.4e-1873.97Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
YP_009262354.1 hypothetical chloroplast RF2 [Spondias tuberosa]1.4e-1873.97Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
YP_009431516.1 hypothetical chloroplast RF2 [Spondias mombin]1.4e-1873.97Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
YP_009751528.1 Ycf2 protein [Thladiantha dubia]8.3e-1975.34Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFE------------RTLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTPFE             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFE------------RTLLDQMTKTLLRKRWLSLDEMKIGF
TrEMBL top hitse value%identityAlignment
A0A191TDM6 Protein Ycf26.9e-1973.97Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
A0A191TDN4 Protein Ycf26.9e-1973.97Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
A0A191TDW0 Protein Ycf26.9e-1973.97Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
A0A249RWP1 Protein Ycf26.9e-1973.97Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
A0A6H0ER44 Protein Ycf24.0e-1975.34Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFE------------RTLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTPFE             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFE------------RTLLDQMTKTLLRKRWLSLDEMKIGF
SwissProt top hitse value%identityAlignment
A6MM80 Protein Ycf28.6e-1971.23Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNG F SNT  E             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
B1A978 Protein Ycf27.1e-2173.97Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP E             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
Q09MB4 Protein Ycf27.1e-2173.97Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP E             TLLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
Q0ZIV6 Protein Ycf23.0e-1971.23Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFE------------RTLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNG F SNTP E              LLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFE------------RTLLDQMTKTLLRKRWLSLDEMKIGF
Q49KT6 Protein Ycf23.5e-2072.6Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP E              LLDQMTKTLLRKRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core2.3e-1968.49Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLI RQRWLRTNSSLSNGFF SNT  E             TLLD+MTKTLL+KRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core2.3e-1968.49Show/hide
Query:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF
        N QEKHF LLI RQRWLRTNSSLSNGFF SNT  E             TLLD+MTKTLL+KRWL  DEMKIGF
Subjt:  NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLRKRWLSLDEMKIGF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAATATGCAAGAAAAGCACTTCAGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCTGTTCTAATACTCCATTCGA
GAGAACACTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTCCCTAGATGAAATGAAAATTGGATTC
mRNA sequenceShow/hide mRNA sequence
ATGTTGAATATGCAAGAAAAGCACTTCAGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCTGTTCTAATACTCCATTCGA
GAGAACACTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTCCCTAGATGAAATGAAAATTGGATTC
Protein sequenceShow/hide protein sequence
MLNMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFERTLLDQMTKTLLRKRWLSLDEMKIGF